locus tag:
FAM13496-i1-1.1_000015
genome:
FAM13496-i1-1.1
species:
Streptococcus thermophilus
taxid:
1308
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Code
|
rlmD |
|
|
|
Ortholog
|
N0.HOG0000734 |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
|
|
KEGG gene
|
K03215 |
rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] |
|
|
Eggnog Protein
|
EP:rumA |
|
|
|
Eggnog Ortholog
|
EO:COG2265 |
|
|
|
Eggnog Description
|
ED:Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family |
|
|
|
EC Number
|
EC:2.1.1.190 |
23S rRNA (uracil1939-C5)-methyltransferase; RumA; RNA uridine methyltransferase A; YgcA |
|
|
Gene Product
|
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
|
|
Sequences
Nucleotide sequence (GC-content: 43.6 %):
ATGTTAAATAAAAACGATATTGTAGAAGTTGAAATTGTCGATTTGACACATGAAGGATCAGGCGTAGCCAAGGTCGACGGCTTTGTCTTTTTCGTGGATAATGCCCTACCGGGTGAAGTCATCAGAATGCGTGTGCTTAAGCTTAAGAAGAATATCGGCTTTGGTAAGGTTGATGAGTATGTGACCCTTTCACCAAGTCGTAATCAGGATATTAATGCTACTTATCTTTGTTCAGGGATTGCTGATTTTGGGCATATGACTTACACTGAGCAGCTTAAGTTCAAGCGTAAACAAGTCGTCGATAACCTCTATAAGACAGCCGGTATCTCGGACGTAGAAGTTGCTGAAACACTAGGTATGGAAACACCTTACGCCTACCGTAATAAGGCGCAGGTGCCCGTTCGCCGTGTTAAAGGTCAGCTTGAAACAGGTTTCTACCGCAAGAATTCGCACGACTTGATTCCAATTGAAGATTTCCTCATTCAAGACAAGGAAATTGATAAACTCATTGTCTTTGTCCGTGACCTTCTCCGTCGTTATGACCTCAAACCTTATGATGAGAAGGAGCAGACAGGTTTGATTCGTCATTTGGTAGTTCGTCGTGGTCATTATTCAGGTCAGATGATGTTGGTCTTTGTAACGACCAAACCAAAAGTTTTCCGTATTGACCAAGTCATTGCTAAGATTACGGAAGCCTTTCCAAGTATTGTTTCAATCATTCAAAACATCAACGATAAGAACACTAACGCCATCTTTGGTAAGGAGTTCCGCACCCTTTATGGCCAAGACACCATCACAGACAGTATGTTGGGCAATGACTATGAGATTTCTGCCCAGTCTTTCTATCAGGTTAATACTGAGATGGCTGAAAAACTCTATCAAATAGCCATTGATTTCTCAGATCTAAACAGCGACAGCATTGTTATTGATGCCTATTCAGGAATCGGGACAATCGGTTTGTCATTTGCGAAACAGGTCAGGGAAGTCTACGGCGTTGAAGTCATCGAAACAGCTGTTGAAGATGCCAAGAAAAATGCAGAACGCAACGGCATTACAAATGCCCACTATGTGGCTAACTCAGCTGAAAATGCCATGGCTAAATGGAGCCAGGATGGTATCAAACCAGATGTCATCATTGTAGATCCACCACGCAAGGGGTTGACGGAAAGCTTCATCAAAGCCAGCGTCGCCATGCAACCTGAGAAGATTACTTATGTCTCATGTAACCCAGCAACCATGGCGCGTGATATCAAACGCTATCAAGAGTTGGGCTATGAATTGAAGAAAGTACAGCCGGTGGATCTTTTTCCGCAGACGCATCACATCGAGTGTGTAGGTCTGCTCACTCGTGTGGAACGGTGA
Protein sequence:
MLNKNDIVEVEIVDLTHEGSGVAKVDGFVFFVDNALPGEVIRMRVLKLKKNIGFGKVDEYVTLSPSRNQDINATYLCSGIADFGHMTYTEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGFYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSGQMMLVFVTTKPKVFRIDQVIAKITEAFPSIVSIIQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSDLNSDSIVIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKRYQELGYELKKVQPVDLFPQTHHIECVGLLTRVER
GenBank Info
gene - rlmD
locus_tag - FAM13496-i1-1.1_000015
EC_number - 2.1.1.190
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002946839.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
protein_id - extdb:FAM13496-i1-1.1_000015
Gene Locus
Located on scaffold FAM13496-i1-1_scf1
FAM13496-i1-1.1_000014
