locus tag:
FAM13496-i1-1.1_000043
genome:
FAM13496-i1-1.1
species:
Streptococcus thermophilus
taxid:
1308
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Code
|
rnr |
|
|
|
Gene Product
|
ribonuclease R |
|
|
|
Ortholog
|
N0.HOG0003491 |
ribonuclease R |
|
|
KEGG gene
|
K12573 |
rnr, vacB; ribonuclease R [EC:3.1.13.1] |
kornec03018 |
|
Eggnog Protein
|
EP:rnr |
|
|
|
Eggnog Ortholog
|
EO:COG0557 |
|
|
|
Eggnog Description
|
ED:3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec03018
|
RNA degradation |
Sequences
Nucleotide sequence (GC-content: 41.9 %):
ATGAAAGAATCTATTATAAATTATTTGAAAGAGCATGGGAAATCCAGTGTAAATGACATTGCCCACGCTCTTAATCACGCTGGCGGTGAAAAGTTCCCACAGCTTATCAAAGTCATATCAGCTATGGAAAGGAAGAGACAGTTGCGCTTTAATCGAGACGGCTCTGTATCCTTACGTCCTAAGAAAGAACATCCCAATCAGGTTACTGTAGAGGGTGTTTTTCATGCCAATAAGAATGGTTTTGGTTTCTTACATGTCGATGACAGTGAGGATGACATGTTTATTGGTCGTAATGACGTTGGCCATGCCATTGATGGTGACACTGTTGCTGCAGTTATTAAGAAGCCAGCAGATCGTTTGCGTGGGACAATGGCTGAAGCAAGAGTTGTTGAAATTGTCGAACGCTCTCTTAAAACGGTTGTTGGGAAATTTATCCTCAATGACGAGAAAGAACCTTATGTAGGTTACATTAAGTCTAAGAATCAAAAAATTCAGCAACCAATCTATATCAAGAAAGGACCAGTTGCTCTTGAGGGGACTGAGATTATTAAGGTTGATATTGAAAAATACCCTAACCGCCATCACGATTATTTTGTAGGAAGTGTTCGAGATATTATTGGTCATCAAGGAGATGCTGGTATTGATGTCTTGGAAGTTTTGGAATCAATGGATATTGTTTCGGAGTTTCCAGAAGATGTTATGGCTGAAGCAGAGGCTGTGCCGGATGCACCTAGTCAAGAAGATCTAATTGGTCGTGTTGACCTTCGTCAAGAAGTGACCTTCACCATTGATGGAGCTGATGCCAAGGACTTGGATGATGCAGTTCATATTAAACGTTTACCAAATGGTAACTATGAGCTAGGTGTCCACATTGCAGATGTGTCTTATTATGTCACAGAGGGTTCTGCCCTCAACCGTGAGGCTGCAGCGCGTGGTACTTCTGTTTATGTGACAGACCGCGTGGTTCCAATGTTGCCTGAGCGTCTTTCAAATGGTATTTGTTCTCTAAATCCCAATGTTGACCGCTTGACTCTGTCAGCTATTATGGAGATTACTCCAAAAGGCAAGGTGATTAATCATAAGATTTGCCAATCTGTAATTAAGACAACCTTCCGTATGACCTATAGTGATGTCAATGAAATGTTGGCTGGAAATCCAGAAAAGATTGAACAGTTTAAGCCTATCATGGATTCTGTGTCAGCTATGGCAGAACTTCATAAGATTTTAGAAGATATGCGCGAACGTCGTGGTGCCCTTAACTTTGATACATCTGAAGCTCGTATCTTGGTTAATGATAAGGGAATGCCAGTTGATATCGTGGTGCGTGAACGTGGGACGGCTGAGCGAATGATTGAGTCCTTTATGTTGGCTGCCAATGAATGTGTGGCAGAGCATTTCGCTAAGGCTAAGTTGCCATTTATTTACCGTATTCACGAAGAGCCTAAAGCGGAGAAATTGCAACGCTTTATGGATTATGCTTCTATCTTTGGTATTCAAATCAAAGGAACAGCTAATAAGATGGATCAGCTAGACTTACAAGATTTCATGGCGCGAGTTCAAGGCAAACCTGGAGCAGAAGTCATGAATATGATGTTGCTTCGTTCAATGCAACAAGCTCGTTATTCAGAACACAATCATGGGCACTATGGACTTGCGGCTCAGTACTATACTCACTTCACCAGTCCGATCCGTCGTTACCCAGACCTTTTGGTTCACCGAATGATTCGTGAGTACACCAACAATATGTCTCAAGAAACGCGTGAACACTTTGAAGAGGTTATTCCAGAGTTAGCTACTTCATCTTCAACCCTTGAGCGTCGTGCTATTGACGCTGAACGTGTCGTTGAAGCCATGAAAAAAGCAGAGTACATGGAAGAGTTTGTTGGTCAAGAATTCGATGGTATTGTCGGAAGTGTGGTTAAATTCGGTATGTTTGTGGAATTGCCAAATACCGTTGAAGGTTTGGTTCATATCACAACACTTCCAGAATTCTACAATTACAATGAACGCACCATGACCCTTCAGGGTGAAAAATCTGGTAAGACTTTCCGTGTTGGCCAACCTATTCGAGTTAAGTTAATTCGTGCAGATAAGGAGACTGGAGACATTGATTTCCAATACCTTCCAAGTGAGTACGATATCACTGAAAAAGTAGATCACAAGGCTCGTCAGGAACGTGAAGAGAAGGCTAAGTCCTTCCGTAATAGAGGACCACGCCGCGATCGTCAGAATGGTGATTTCGAAAGTCGTGGTAAACGTGTAAATAAGCGTAGCGGTCAAGATAGTAGTGGTTACAAAGGCTCTTATGATGAAAAGCGTAAGTCATCTAAGAAACCAGACAAGCGTAAGAATCAAAACCGTCCTCATAATGATAATAAGGGACGTGAGAGTGGTCGTCGTAAGAAAAAAGAAAACAAACCTTTCTACAAGGACGTTGCTAAAAAACGAAAATAG
Protein sequence:
MKESIINYLKEHGKSSVNDIAHALNHAGGEKFPQLIKVISAMERKRQLRFNRDGSVSLRPKKEHPNQVTVEGVFHANKNGFGFLHVDDSEDDMFIGRNDVGHAIDGDTVAAVIKKPADRLRGTMAEARVVEIVERSLKTVVGKFILNDEKEPYVGYIKSKNQKIQQPIYIKKGPVALEGTEIIKVDIEKYPNRHHDYFVGSVRDIIGHQGDAGIDVLEVLESMDIVSEFPEDVMAEAEAVPDAPSQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGSALNREAAARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTLSAIMEITPKGKVINHKICQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFDTSEARILVNDKGMPVDIVVRERGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMIREYTNNMSQETREHFEEVIPELATSSSTLERRAIDAERVVEAMKKAEYMEEFVGQEFDGIVGSVVKFGMFVELPNTVEGLVHITTLPEFYNYNERTMTLQGEKSGKTFRVGQPIRVKLIRADKETGDIDFQYLPSEYDITEKVDHKARQEREEKAKSFRNRGPRRDRQNGDFESRGKRVNKRSGQDSSGYKGSYDEKRKSSKKPDKRKNQNRPHNDNKGRESGRRKKKENKPFYKDVAKKRK
GenBank Info
gene - rnr
locus_tag - FAM13496-i1-1.1_000043
inference - COORDINATES: similar to AA sequence:RefSeq:WP_014634132.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease R
protein_id - extdb:FAM13496-i1-1.1_000043
Gene Locus
Located on scaffold FAM13496-i1-1_scf1
FAM13496-i1-1.1_000042
