update range to 10000 bp
locus tag: FAM13496-i1-1.1_000967 genome: FAM13496-i1-1.1
species: Streptococcus thermophilus taxid: 1308

Annotations

Type Name Description Pathways
KEGG reaction
 R00440 polyribonucleotide:phosphate cytidylyltransferase; RNA + Orthophosphate <=> RNA + CDP
KEGG reaction
 R00439 polyribonucleotide:phosphate guanylyltransferase; RNA + Orthophosphate <=> RNA + GDP
KEGG reaction
 R00438 polyribonucleotide:phosphate uridylyltransferase; RNA + Orthophosphate <=> RNA + UDP
KEGG reaction
 R00437 polyribonucleotide:phosphate adenylyltransferase; RNA + Orthophosphate <=> RNA + ADP
Gene Product
 polyribonucleotide nucleotidyltransferase
Gene Code
 pnp
Ortholog
 N0.HOG0001849 polyribonucleotide nucleotidyltransferase
KEGG gene
 K00962 pnp, PNPT1; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] kornec03018
Gene Ontology
 GO:1901575 organic substance catabolic process
Gene Ontology
 GO:1901363 heterocyclic compound binding
Gene Ontology
 GO:1901361 organic cyclic compound catabolic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0097159 organic cyclic compound binding
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0065007 biological regulation
Gene Ontology
 GO:0060255 regulation of macromolecule metabolic process
Gene Ontology
 GO:0050789 regulation of biological process
Gene Ontology
 GO:0048519 negative regulation of biological process
Gene Ontology
 GO:0046700 heterocycle catabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044270 cellular nitrogen compound catabolic process
Gene Ontology
 GO:0044265 cellular macromolecule catabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044248 cellular catabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034655 nucleobase-containing compound catabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019439 aromatic compound catabolic process
Gene Ontology
 GO:0019222 regulation of metabolic process
Gene Ontology
 GO:0016779 nucleotidyltransferase activity
Gene Ontology
 GO:0016772 transferase activity, transferring phosphorus-containing groups
Gene Ontology
 GO:0016740 transferase activity
Gene Ontology
 GO:0016071 mRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010629 negative regulation of gene expression
Gene Ontology
 GO:0010605 negative regulation of macromolecule metabolic process
Gene Ontology
 GO:0010468 regulation of gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009892 negative regulation of metabolic process
Gene Ontology
 GO:0009057 macromolecule catabolic process
Gene Ontology
 GO:0009056 catabolic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006402 mRNA catabolic process
Gene Ontology
 GO:0006401 RNA catabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0004654 polyribonucleotide nucleotidyltransferase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003729 mRNA binding
Gene Ontology
 GO:0003723 RNA binding
Gene Ontology
 GO:0003676 nucleic acid binding
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:pnp
Eggnog Ortholog
 EO:COG1185
Eggnog Description
 ED:Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction
EC Number
 EC:2.7.7.8 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase; PNPase (ambiguous); nucleoside diphosphate:polynucleotidyl transferase; polyribonucleotide phosphorylase

Occurs in the following pathway maps:

Pathway Description
kornec03018 RNA degradation

Sequences

Nucleotide sequence (GC-content: 43.4 %):

ATGGCTAAACAAACTTTTGAGATGACCTTTGAAGGACGCCCACTTGTTGTGGAAGTGGGACAGGTAGCCAAGCAGGCTAATGGTGCCGTTGTAGTACGTTATGGAGATACAACCGTATTGTCAGTAGCTGTTATGTCTAAAAAGATGGCAACTGCAAATTTCTTTCCTTTACAGGTTAATTATGAGGAAAAAATGTATGCGGCTGGTAAGTTCCCAGGAGGCTTTAGCAAGCGTGAGGGACGACCTTCGACTGATGCCACTTTGACTGCTCGTCTTATTGACCGTCCTATTCGTCCCATGTTTGCGGAGGGTTTTCGTAACGAAGTTCAAGTCATTAATACTGTTCTCTCTTATGATGAGAATGCTAGTGCGCCAATGGCCGCTATGTTTGGGAGTTCTTTAGCACTTTCTATTTCGGATATTCCTTTCAATGGTCCTATTGCTGGGGTTCAAGTGGCTTATGCAGCGGAAGATTTCATCATCAACCCAAGTGCATCAGATAAAGAAGTTTCACATTTAGACTTGATAGTGGCAGGTACCAAGGAAGCCATCAATATGGTAGAAGCAGGTGCTCAGGAATTGTCAGAGGACATCATGTTGCAAGCACTTTTGAAGGGACATGAAGCTATTCAAGAGTTGGTTGATTTCCAAAATTATATTGTTGCGGCTGTTGGTAAGGAAAAGGCTGAGGTTGAACTGTTCCAAGTGGATGCTGATTTGAAGGCTGAAATTGAAGCAGTTTATTATGATCAGTTAGCTAAGGCTGTTCAGGTGGAAGAAAAACTGGTGCGTGAGGCAGCAACCAAGGCTGTTAAAGAAGAGGTCCTCGCTTCTTATCAAGAACGTTTTGCAGAAGATGAAGATAAGGAAACCATTCTACGTGATGTGGTAGAAATCCTTGAGCAGATGGAACATGCTGAAGTGCGCCGTCTGATTACAGAAGACAAGATTCGTCCTGATGGTCGTCGTGTGGATGAAATTCGTCCTTTGGATGCTGAAATTGACTTTCTGCCAAATGTTCATGGATCAGGTCTCTTTACACGTGGGCAAACCCAGGCCTTATCAGTCTTGACTTTAGCCCCTATGAGTGATACACAACTCGTTGATGGTTTGGATCCAGAGTATAAGAAACGTTTCCTTCACCACTACAATTTCCCTCAGTATTCGGTGGGTGAAACAGGGCGTTACGGTGCACCAGGCCGTCGTGAAATTGGTCACGGAGCTTTAGGTGAACGTGCCCTTGCTCAAGTTCTTCCAAGCGTTGAAGAGTTTCCATATGCTATCCGTTTGGTAGCTGAAGTCTTGGAGTCAAATGGTTCTTCTTCACAGGCTTCTATTTGTGCAGGCACTTTGGCTCTTATGGCCGGTGGGGTGCCGATTAAGGCACCTGTTGCGGGAATTGCCATGGGTCTTATTTCAGATGGAACCAACTACACTGTTCTAACCGACATTCAAGGTTTAGAAGATCATTTTGGTGATATGGACTTTAAGGTGGCTGGTACACGTCTAGGTATTACAGCTCTTCAGATGGATATTAAGATTTCAGGAATTACACCTGCTATTCTTGAGGAAGCTTTAGCTCAAGCTAAGGTGGCACGTTTTGAAATTCTTGATGTTATTGAGTCAGCGATTGCTGAACCACGTTCGGAATTGGCCCCAACAGCTCCTAAGATCGATAGTATTCAGATTCCTGTTGACAAGATTAAGGTTGTCATCGGTAAGGGTGGTGAAACCATTGACAAGATTATCGCTGAGACAGGTGTCACAATTGATATCGATGAAGAAGGACTCGTTCAGATTTTCTCTAGTGATCAGGATGCTATTGACCGTGCTAAAACAATCATCTCTGACCTTGTACGTGAAGCTAAGGTTGGCGAGGTCTACACCGTACCAGTTGTGCGTATTGAAAAGTTCGGTGCCTTTGTCCACCTCTTCAATAAGACTGATGCCTTAGTCCACATTTCAGAATTAGCTTGGAAACACACTGAGCATGTTGAAGATGTGGTTAAGGTTGGGGATATGGTAACCGTTAAAATTATCAAAATTGATGAAAAAGGTCGTGTTGATGCTTCAATCAAAACCTTGCTTCCTAAACCTGAAAAAAATGAAGACGGGGAAAATGGAGAAGAGCATCGTCACTGCTGTTGTTCTCATCATAAACCAGACCATCATAGTGAAAGTATGGAAGCACCGAAAAAAAGTGATGAATCAGAAACGAAAGAATAA

Protein sequence:

MAKQTFEMTFEGRPLVVEVGQVAKQANGAVVVRYGDTTVLSVAVMSKKMATANFFPLQVNYEEKMYAAGKFPGGFSKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSYDENASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYAAEDFIINPSASDKEVSHLDLIVAGTKEAINMVEAGAQELSEDIMLQALLKGHEAIQELVDFQNYIVAAVGKEKAEVELFQVDADLKAEIEAVYYDQLAKAVQVEEKLVREAATKAVKEEVLASYQERFAEDEDKETILRDVVEILEQMEHAEVRRLITEDKIRPDGRRVDEIRPLDAEIDFLPNVHGSGLFTRGQTQALSVLTLAPMSDTQLVDGLDPEYKKRFLHHYNFPQYSVGETGRYGAPGRREIGHGALGERALAQVLPSVEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLEDHFGDMDFKVAGTRLGITALQMDIKISGITPAILEEALAQAKVARFEILDVIESAIAEPRSELAPTAPKIDSIQIPVDKIKVVIGKGGETIDKIIAETGVTIDIDEEGLVQIFSSDQDAIDRAKTIISDLVREAKVGEVYTVPVVRIEKFGAFVHLFNKTDALVHISELAWKHTEHVEDVVKVGDMVTVKIIKIDEKGRVDASIKTLLPKPEKNEDGENGEEHRHCCCSHHKPDHHSESMEAPKKSDESETKE

GenBank Info

gene - pnp
locus_tag - FAM13496-i1-1.1_000967
EC_number - 2.7.7.8
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002948442.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - polyribonucleotide nucleotidyltransferase
protein_id - extdb:FAM13496-i1-1.1_000967

Gene Locus

Located on scaffold FAM13496-i1-1_scf11

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
FAM13496-i1-1.1_000966
FAM13496-i1-1.1_000968