update range to 10000 bp
locus tag: FAM13496-i1-1.1_001018 genome: FAM13496-i1-1.1
species: Streptococcus thermophilus taxid: 1308

Annotations

Type Name Description Pathways
KEGG reaction
 R04212 Asp-tRNA(Asn):L-glutamine amido-ligase (ADP-forming); L-Asparaginyl-tRNA(Asn) + L-Glutamate + Orthophosphate + ADP <=> L-Aspartyl-tRNA(Asn) + L-Glutamine + ATP + H2O kornec00970
KEGG reaction
 R03905 Glu-tRNA(Gln):L-glutamine amido-ligase(ADP-forming); Glutaminyl-tRNA + L-Glutamate + Orthophosphate + ADP <=> L-Glutamyl-tRNA(Gln) + L-Glutamine + ATP + H2O kornec00970kornec01100
Ortholog
 N0.HOG0001310 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
KEGG gene
 K02434 gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] kornec00970kornec01100
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140101 catalytic activity, acting on a tRNA
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
Gene Ontology
 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043436 oxoacid metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043039 tRNA aminoacylation
Gene Ontology
 GO:0043038 amino acid activation
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019752 carboxylic acid metabolic process
Gene Ontology
 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor
Gene Ontology
 GO:0016879 ligase activity, forming carbon-nitrogen bonds
Gene Ontology
 GO:0016874 ligase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006520 cellular amino acid metabolic process
Gene Ontology
 GO:0006399 tRNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0006082 organic acid metabolic process
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Code
 gatB
Eggnog Protein
 EP:gatB
Eggnog Ortholog
 EO:COG0064
Eggnog Description
 ED:Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
EC Number
 EC:6.3.5.7 glutaminyl-tRNA synthase (glutamine-hydrolysing); Glu-AdT; Glu-tRNAGln amidotransferase; glutamyl-tRNAGln amidotransferase; Glu-tRNAGln:L-glutamine amido-ligase (ADP-forming); GatCAB; GatFAB; GatDE kornec00970kornec01100
EC Number
 EC:6.3.5.6 asparaginyl-tRNA synthase (glutamine-hydrolysing); Asp-AdT; Asp-tRNAAsn amidotransferase; aspartyl-tRNAAsn amidotransferase; Asn-tRNAAsn:L-glutamine amido-ligase (ADP-forming); aspartyl-tRNAAsn:L-glutamine amido-ligase (ADP-forming); GatCAB kornec00970
EC Number
 EC:6.3.5.- -
Gene Product
 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB

Occurs in the following pathway maps:

Pathway Description
kornec00970 Aminoacyl-tRNA biosynthesis
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 45.0 %):

ATGAACTTTGAAACAGTCATCGGACTTGAAGTCCACGTTGAATTGAATACAAACTCAAAAATTTTCTCACCAACCTCTGCTCACTTTGGGAACGAACAAAATACCAATACTAATGTGATCGACTGGTCTTTCCCAGGGGTACTTCCTGTCTTGAACAAGGGTGTTGTGGACGCTGGAATCAAGGCCGCTTTGGCGCTGAATATGGATATCCACCAGCACATGCACTTTGACCGTAAGAACTACTTCTATCCTGATAATCCAAAAGCCTACCAAATTTCGCAATTTGACGAGCCAATCGGTTATAACGGTTGGATTGAAGTGCAATTGGAAGACGGAACAACTAAGAAAATCGGGATTGAACGGGCTCACTTGGAAGAAGATGCCGGTAAGAACACGCATGGAACAGACGGTTTCTCTTATGTTGACCTTAACCGTCAAGGGGTGCCATTGATCGAGATTGTATCTGAAGCCGATATGCGTTCTCCTGAAGAAGCCTACGCTTATTTGACAGCTCTCAAAGAAGTCATCCAATACACAGGCATTTCTGATGTCAAGATGGAAGAAGGATCTATGCGTGTGGATGCCAATATTTCCCTTCGTCCATATGGTCAAGAGGAATTTGGTACCAAGACGGAGTTGAAAAACTTGAACTCCTTCTCGAATGTCCGCAAAGGTCTTGAATACGAAGTGCAACGTCAAGCGAAAATCTTGCGCTCAGGTGGTGTCATTCGTCAAGAAACACGCCGTTATGATGAAGCCAGCAAGAGCACAATCCTTATGCGTGTCAAAGAAGGAGCAGCGGATTACCGTTACTTCCCAGAACCAGACCTTCCATTGTTTGAAATCTCAGATGAGTGGATTGAGGAAATGCGTACGGAGTTACCAGAATTTCCAAAAGACCGCCGTGCTCGCTATGTGGCAGAGCTTGGTTTGTCTGACTATGATGCCAACCAATTGACAGCTACGAAGGTTACTTCTGACTTCTTTGAAGCAGCCGTAGCCCTTGGTGGAGACGCCAAACAAGTCTCTAACTGGCTTCAAGGTGAAGTCGCTCAGTTCTTGAACGCAGAAGGCAAAACGCTTGAAGAAATTCAATTGACACCCGAAAACTTGGTAGAAATGATTGCTATCATCGAAGATGGCACCATCTCATCTAAGATTGCCAAGAAAGTATTCGTTCATTTGGCGAAAAACGGTGGCGGTGCGCGTGAATACGTCGAAAAAGCTGGATTGGTACAGATTTCAGATCCTGAAGTCTTGATTCCAATCATCCACCAAGTCTTTGCAGATAATGAAGCAGCCGTAGCCGACTTCAAGTCAGGTAAACGTAATGCTGACAAGGCCTTCACAGGCTTCCTCATGAAAGCAACTAAAGGCCAAGCAAACCCACAAGTAGCCCTCAAGTTACTTGCCCAAGAATTGGCTAAGTTGAAAGAAGATTGA

Protein sequence:

MNFETVIGLEVHVELNTNSKIFSPTSAHFGNEQNTNTNVIDWSFPGVLPVLNKGVVDAGIKAALALNMDIHQHMHFDRKNYFYPDNPKAYQISQFDEPIGYNGWIEVQLEDGTTKKIGIERAHLEEDAGKNTHGTDGFSYVDLNRQGVPLIEIVSEADMRSPEEAYAYLTALKEVIQYTGISDVKMEEGSMRVDANISLRPYGQEEFGTKTELKNLNSFSNVRKGLEYEVQRQAKILRSGGVIRQETRRYDEASKSTILMRVKEGAADYRYFPEPDLPLFEISDEWIEEMRTELPEFPKDRRARYVAELGLSDYDANQLTATKVTSDFFEAAVALGGDAKQVSNWLQGEVAQFLNAEGKTLEEIQLTPENLVEMIAIIEDGTISSKIAKKVFVHLAKNGGGAREYVEKAGLVQISDPEVLIPIIHQVFADNEAAVADFKSGKRNADKAFTGFLMKATKGQANPQVALKLLAQELAKLKED

GenBank Info

gene - gatB
locus_tag - FAM13496-i1-1.1_001018
EC_number - 6.3.5.-
inference - COORDINATES: similar to AA sequence:RefSeq:YP_003446769.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
protein_id - extdb:FAM13496-i1-1.1_001018

Gene Locus

Located on scaffold FAM13496-i1-1_scf12

FAM13496-i1-1.1_001017
FAM13496-i1-1.1_001019