update range to 10000 bp
locus tag: FAM13496-i1-1.1_001083 genome: FAM13496-i1-1.1
species: Streptococcus thermophilus taxid: 1308

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0004110 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
Gene Product
 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
KEGG gene
 K04094 trmFO, gid; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
Gene Ontology
 GO:1901363 heterocyclic compound binding
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901265 nucleoside phosphate binding
Gene Ontology
 GO:0097159 organic cyclic compound binding
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0050662 obsolete coenzyme binding
Gene Ontology
 GO:0050660 flavin adenine dinucleotide binding
Gene Ontology
 GO:0048037 obsolete cofactor binding
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043414 macromolecule methylation
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043168 anion binding
Gene Ontology
 GO:0043167 ion binding
Gene Ontology
 GO:0036094 small molecule binding
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0032259 methylation
Gene Ontology
 GO:0030488 tRNA methylation
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008033 tRNA processing
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006400 tRNA modification
Gene Ontology
 GO:0006399 tRNA metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0002098 tRNA wobble uridine modification
Gene Ontology
 GO:0002097 tRNA wobble base modification
Gene Ontology
 GO:0001510 RNA methylation
Gene Ontology
 GO:0000166 nucleotide binding
Eggnog Protein
 EP:trmFO
Eggnog Ortholog
 EO:COG1206
Eggnog Description
 ED:Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
EC Number
 EC:2.1.1.74 methylenetetrahydrofolate---tRNA-(uracil54-C5)-methyltransferase [NAD(P)H-oxidizing]; folate-dependent ribothymidyl synthase; methylenetetrahydrofolate-transfer ribonucleate uracil 5-methyltransferase; 5,10-methylenetetrahydrofolate:tRNA-UPsiC (uracil-5-)-methyl-transferase; 5,10-methylenetetrahydrofolate:tRNA (uracil-5-)-methyl-transferase; TrmFO; folate/FAD-dependent tRNA T54 methyltransferase; methylenetetrahydrofolate---tRNA-(uracil54-C5)-methyltransferase (FADH2-oxidizing)

Sequences

Nucleotide sequence (GC-content: 42.0 %):

ATGTCTCAATCAAAAGCAGATTATATTAACGTGATTGGAGCTGGTTTGGCCGGATCCGAGGCGGCTTATCAGATTGCCAAACGTGGTATTCCAGTAAAACTTTATGAAATGCGTGGGGTCAAAGCAACACCACAGCATAAGACAACAAATTTTGCAGAATTGGTTTGCTCTAACTCTTTCCGTGGAGATAGCTTGACCAATGCTGTAGGGCTTCTAAAAGAAGAAATGCGTCGTTTGGACTCTATCATTATGCGTAATGGAGAAGCTCACCGTGTGCCAGCAGGTGGTGCCATGGCGGTGGACCGTGAAGGCTATGCAGAAGCAGTGACAGCTGAAATTGAAAGTCATCCCTTAATTGAAGTTATCCGTAAAGAAATCACAGAAATTCCTGATGATGCTATTACAGTTATTGCTTCAGGTCCCCTAACTTCTGATGCTTTAGCTGAAAAGATTCATGAGCTTAACGGTGGAGACGGGTTCTATTTCTATGATGCCGCTGCACCAATCGTTGATAAAGCAACTATCGACATGAACAAGGTTTACCTTAAGTCACGCTATGATAAGGGTGAAGCAGCTTATCTAAACTGTCCAATGACCAAGGAAGAGTTCATGGCCTTCTATGAGGCCTTGACTACAGCTGAAGAAGCTCCTTTGAATTCTTTTGAAAAAGAAAAGTATTTCGAAGGGTGTATGCCTATCGAGGTTATGGCTAAACGTGGTATTAAAACAATGCTCTACGGTCCTATGAAACCAGTTGGTTTGGAGTATCCTGAAGATTATATGGGTCCACGTGATGGTGACTTCAAGACACCTTATGCGGTTGTTCAGCTTCGTCAGGACAATGCGGCTGGTAGCCTCTACAATATCGTTGGTTTCCAAACCCACCTCAAATGGGGAGAGCAAAAACGTGTCTTCCAAATGATTCCAGGTCTTGAAAATGCAGAATTTGTTCGTTATGGGGTAATGCACCGTAACTCTTACATGGATTCGCCAAACTTGCTTAAACAGACCTTCCAATCAAAATCAAACCCTAATCTGTTCTTTGCTGGACAAATGACTGGTGTTGAAGGTTATGTTGAATCAGCTGCCTCAGGTTTGGTTGCTGGAATCAATGCAGCCCGTCTTTTTAAGGGTGAAGATGAAGTTATTTTCCCTCATACAACAGCAATCGGTAGCCTTCCATATTATGTGACACATGCTGAAAGCAAACATTTCCAACCAATGAATGTTAACTTTGGTATTATCAAAGAATTAGAAGGCCCACGTATTCGTGACAAGAAAGAGCGTTATGAAAAAATCGCAGAAAGATCTCTTAAGGATTTGCAAACTTTTATAGATGCTTGA

Protein sequence:

MSQSKADYINVIGAGLAGSEAAYQIAKRGIPVKLYEMRGVKATPQHKTTNFAELVCSNSFRGDSLTNAVGLLKEEMRRLDSIIMRNGEAHRVPAGGAMAVDREGYAEAVTAEIESHPLIEVIRKEITEIPDDAITVIASGPLTSDALAEKIHELNGGDGFYFYDAAAPIVDKATIDMNKVYLKSRYDKGEAAYLNCPMTKEEFMAFYEALTTAEEAPLNSFEKEKYFEGCMPIEVMAKRGIKTMLYGPMKPVGLEYPEDYMGPRDGDFKTPYAVVQLRQDNAAGSLYNIVGFQTHLKWGEQKRVFQMIPGLENAEFVRYGVMHRNSYMDSPNLLKQTFQSKSNPNLFFAGQMTGVEGYVESAASGLVAGINAARLFKGEDEVIFPHTTAIGSLPYYVTHAESKHFQPMNVNFGIIKELEGPRIRDKKERYEKIAERSLKDLQTFIDA

GenBank Info

locus_tag - FAM13496-i1-1.1_001083
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002947913.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
protein_id - extdb:FAM13496-i1-1.1_001083

Gene Locus

Located on scaffold FAM13496-i1-1_scf13

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM13496-i1-1.1_001082
FAM13496-i1-1.1_001084