update range to 10000 bp
locus tag: FAM13496-i1-1.1_001163 genome: FAM13496-i1-1.1
species: Streptococcus thermophilus taxid: 1308

Annotations

Type Name Description Pathways
Gene Product
 sigma-70 family RNA polymerase sigma factor
Ortholog
 N0.HOG0003617 sigma-70 family RNA polymerase sigma factor
KEGG gene
 K12296 comX1_2; competence protein ComX kornec02020kornec02024
KEGG gene
 K03091 sigH; RNA polymerase sporulation-specific sigma factor
KEGG gene
 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
Eggnog Protein
 EP:sigH
Eggnog Ortholog
 EO:COG1595
Eggnog Description
 ED:DNA-templated transcription

Occurs in the following pathway maps:

Pathway Description
kornec02020 Two-component system
kornec02024 Quorum sensing

Sequences

Nucleotide sequence (GC-content: 36.9 %):

ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCAGCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGAAAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCAGTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATATGGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATCGATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCATGTAATGAAGAAGACTGA

Protein sequence:

MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQESVKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDPCNEED

GenBank Info

locus_tag - FAM13496-i1-1.1_001163
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002949220.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - sigma-70 family RNA polymerase sigma factor
protein_id - extdb:FAM13496-i1-1.1_001163

Gene Locus

Located on scaffold FAM13496-i1-1_scf14

FAM13496-i1-1.1_001162
FAM13496-i1-1.1_001164