Annotations

Type Name Description Pathways
KEGG reaction
R04199 2,3,4,5-tetrahydrodipicolinate:NADP+ 4-oxidoreductase; 2,3,4,5-Tetrahydrodipicolinate + NADP+ + H2O <=> (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate + NADPH + H+ kornec00261kornec00300kornec01100kornec01110kornec01120kornec01230
KEGG reaction
R04198 2,3,4,5-tetrahydrodipicolinate:NAD+ 4-oxidoreductase; 2,3,4,5-Tetrahydrodipicolinate + NAD+ + H2O <=> (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate + NADH + H+ kornec00261kornec00300kornec01100kornec01110kornec01120kornec01230
Ortholog
N0.HOG0001437 4-hydroxy-tetrahydrodipicolinate reductase
KEGG gene
K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] kornec00261kornec00300kornec01100kornec01110kornec01120kornec01230
Gene Ontology
GO:1901576 organic substance biosynthetic process
Gene Ontology
GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
GO:1901564 organonitrogen compound metabolic process
Gene Ontology
GO:0071704 organic substance metabolic process
Gene Ontology
GO:0055114 obsolete oxidation-reduction process
Gene Ontology
GO:0046451 diaminopimelate metabolic process
Gene Ontology
GO:0046394 carboxylic acid biosynthetic process
Gene Ontology
GO:0044464 obsolete cell part
Gene Ontology
GO:0044444 obsolete cytoplasmic part
Gene Ontology
GO:0044424 obsolete intracellular part
Gene Ontology
GO:0044283 small molecule biosynthetic process
Gene Ontology
GO:0044281 small molecule metabolic process
Gene Ontology
GO:0044249 cellular biosynthetic process
Gene Ontology
GO:0044238 primary metabolic process
Gene Ontology
GO:0044237 cellular metabolic process
Gene Ontology
GO:0043650 dicarboxylic acid biosynthetic process
Gene Ontology
GO:0043648 dicarboxylic acid metabolic process
Gene Ontology
GO:0043436 oxoacid metabolic process
Gene Ontology
GO:0019877 diaminopimelate biosynthetic process
Gene Ontology
GO:0019752 carboxylic acid metabolic process
Gene Ontology
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor
Gene Ontology
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
Gene Ontology
GO:0016491 oxidoreductase activity
Gene Ontology
GO:0016053 organic acid biosynthetic process
Gene Ontology
GO:0009987 cellular process
Gene Ontology
GO:0009058 biosynthetic process
Gene Ontology
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase
Gene Ontology
GO:0008652 cellular amino acid biosynthetic process
Gene Ontology
GO:0008152 metabolic process
Gene Ontology
GO:0008150 biological_process
Gene Ontology
GO:0006807 nitrogen compound metabolic process
Gene Ontology
GO:0006520 cellular amino acid metabolic process
Gene Ontology
GO:0006082 organic acid metabolic process
Gene Ontology
GO:0005829 cytosol
Gene Ontology
GO:0005737 cytoplasm
Gene Ontology
GO:0005623 obsolete cell
Gene Ontology
GO:0005622 intracellular anatomical structure
Gene Ontology
GO:0005575 cellular_component
Gene Ontology
GO:0003824 catalytic activity
Gene Ontology
GO:0003674 molecular_function
Eggnog Protein
EP:dapB
Eggnog Ortholog
EO:COG0289
Eggnog Description
ED:Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate
EC Number
EC:1.17.1.8 4-hydroxy-tetrahydrodipicolinate reductase; dihydrodipicolinate reductase (incorrect); dihydrodipicolinic acid reductase (incorrect); 2,3,4,5-tetrahydrodipicolinate:NAD(P)+ oxidoreductase (incorrect); dapB (gene name) kornec00261kornec00300kornec01100kornec01110kornec01120
Gene Product
4-hydroxy-tetrahydrodipicolinate reductase

Occurs in the following pathway maps:

Pathway Description
kornec00261 Monobactam biosynthesis
kornec00300 Lysine biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01120 Microbial metabolism in diverse environments
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 42.4 %):

ATGTCTATTAAAGTTATTGTTGCCGGATTTAAAGGAAGAATGGGTTCAACTGCGGTTGAAATGGTTAAGGGAGATGATGAATTGACCTTGGCTGCCTTGCTTGACCCGTTTGCGGCAGAAAAGGAAGTGGATGGTGTTCCTGTCTTCACGGATAAAGCTGATTTGGTTGGTTTCGATGCAGATGTTTGGGTAGATTTCACCATTCCTGCTGTTGCCTATGAAAATACCTATTTTGCCTTGGAAAATGGCTTTGCACCGGTTGTAGGAACAACAGGCTTTACTGAAGCACAAATTCAGAAATTGACAGATCTTTCTAAAGACAAGTCTATAGGTGGATTGATTGCTCCTAATTTTGCTATTGGTGCTATCCTTCTTATGAAGTTTGCAGCAGAAGCTAGTAAATATTTCCCAGATCTTGAAATCATTGAGCTTCACCACGATAAAAAGAAAGATGCGCCATCAGGTACAGCAGTGAAAACAGCTGAACTTATTCGTGAGGTTCGCGAGAGCAAACGTCAGGGAGCTGAGGATGAAATGGAAACACTTGCTGGAGCACGTGGTGCAGAGTTTGATGGTTTCCGTATTCACAGTGTTCGTTTGCCAGGTCTTGTGGCTCACCAAGAGGTTATCTTTGGTGCCCAAGGAGAAGGATTGACCTTGCGTCACGATTCTTATGACCGTATTTCTTTTATGAGCGGGGTCAATCTTGGTATTAAAGAAGTGGTTAAACGTGATCAGCTTGTTTATGGTTTGGAACATTTACTATGA

Protein sequence:

MSIKVIVAGFKGRMGSTAVEMVKGDDELTLAALLDPFAAEKEVDGVPVFTDKADLVGFDADVWVDFTIPAVAYENTYFALENGFAPVVGTTGFTEAQIQKLTDLSKDKSIGGLIAPNFAIGAILLMKFAAEASKYFPDLEIIELHHDKKKDAPSGTAVKTAELIREVRESKRQGAEDEMETLAGARGAEFDGFRIHSVRLPGLVAHQEVIFGAQGEGLTLRHDSYDRISFMSGVNLGIKEVVKRDQLVYGLEHLL

GenBank Info

locus_tag - FAM13496-i1-1.1_001285
EC_number - 1.17.1.8
inference - COORDINATES: similar to AA sequence:RefSeq:NP_721307.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 4-hydroxy-tetrahydrodipicolinate reductase
protein_id - extdb:FAM13496-i1-1.1_001285

Gene Locus

Located on scaffold FAM13496-i1-1_scf17


Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol

FAM13496-i1-1.1_001284
FAM13496-i1-1.1_001286