locus tag:
FAM13496-i1-1.1_001400
genome:
FAM13496-i1-1.1
species:
Streptococcus thermophilus
taxid:
1308
Annotations
| Type |
Name |
Description |
Pathways |
|
Ortholog
|
N0.HOG0001843 |
helix-turn-helix domain-containing protein |
|
|
KEGG gene
|
K20373 |
rgg2; HTH-type transcriptional regulator, SHP2-responsive activator |
kornec02024 |
|
Gene Product
|
helix-turn-helix domain-containing protein |
|
|
|
Eggnog Ortholog
|
EO:COG1396 |
|
|
|
Eggnog Description
|
ED:sequence-specific DNA binding |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec02024
|
Quorum sensing |
Sequences
Nucleotide sequence (GC-content: 32.9 %):
ATGACTAATAGAGAAAAATTTAAGGCAATTCGTAAGCAAAGAAAACTATCTTTAAAAGTACTTGGAGAAATTGCTGGTTCTGCCACCAGTATTTCAGATTTTGAAAATGGTCATACAACCCTTTCTAATGATGTTCTATTTCGACTTCTAGGATTTATGTTAGTTGAAATTAATGAATTCTTTGAATGGAAAGATTTCCGAGACAAAGATTTTTACCAGCTAACCGAGCAGTTAGAAGAGGCACTGAATAACAAAGATACTCAGATACTTTCCGAACTAAAATCATATCTCTATGAGTTATCAGATCAGAAAGGTCAATACATTTACCAAATCATAGCTCGCGTTTTAGAGGTAATCATCTGCGAACTAAAGCAATTAACCGTTCCTCAAGATACCATTTTTCAACTCACTGACTACTTTATTTCATTAGAGTACTGGACAAATCTTGATGTCGGTCTGCTTGGTAATCTCGTCCCTTATTTTACATCGGATGCTCTTATAGTCCTCACTAATACTATTCTCGAAGATACTCCTCAGTCGCTAAAAAATAACCTAGATCGTATTAAAATTGATACCGTCCTAAACTGCCTATCTGTTTTTTTAGAACGAAAAGAAAGAAACGCTAGCCAAAAACTTCTGACATTATTATTTAACAAAAATTATCCAACCTATTTTTCTTTTGAAAAACTATATCTACATGAACTTAAAGCCATATTTGATTATCTTTGGGGTGACAAAGAGGAGTCTTTAAAAATACATCAAACTATTCTAGAGACAATTAATATTATTCTTAATCCTGAGGCAGTGAAGGAATGGGATGATAACTTTAGAAAAAACACATCTCAACTAGCATAA
Protein sequence:
MTNREKFKAIRKQRKLSLKVLGEIAGSATSISDFENGHTTLSNDVLFRLLGFMLVEINEFFEWKDFRDKDFYQLTEQLEEALNNKDTQILSELKSYLYELSDQKGQYIYQIIARVLEVIICELKQLTVPQDTIFQLTDYFISLEYWTNLDVGLLGNLVPYFTSDALIVLTNTILEDTPQSLKNNLDRIKIDTVLNCLSVFLERKERNASQKLLTLLFNKNYPTYFSFEKLYLHELKAIFDYLWGDKEESLKIHQTILETINIILNPEAVKEWDDNFRKNTSQLA
GenBank Info
locus_tag - FAM13496-i1-1.1_001400
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002948290.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - helix-turn-helix domain-containing protein
protein_id - extdb:FAM13496-i1-1.1_001400
Gene Locus
Located on scaffold FAM13496-i1-1_scf20
FAM13496-i1-1.1_001399
