update range to 10000 bp
locus tag: FAM13496-i1-1.1_001452 genome: FAM13496-i1-1.1
species: Streptococcus thermophilus taxid: 1308

Annotations

Type Name Description Pathways
Gene Product
 ribonuclease J
Ortholog
 N0.HOG0003508 ribonuclease J
KEGG gene
 K12574 rnj; ribonuclease J [EC:3.1.-.-] kornec03018
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
Gene Ontology
 GO:0090501 RNA phosphodiester bond hydrolysis
Gene Ontology
 GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016071 mRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006397 mRNA processing
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004540 ribonuclease activity
Gene Ontology
 GO:0004521 endoribonuclease activity
Gene Ontology
 GO:0004519 endonuclease activity
Gene Ontology
 GO:0004518 nuclease activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rnjB
Eggnog Ortholog
 EO:COG0595
Eggnog Description
 ED:An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay

Occurs in the following pathway maps:

Pathway Description
kornec03018 RNA degradation

Sequences

Nucleotide sequence (GC-content: 42.2 %):

ATGAGCGATATTAAAATTATTGCCCTAGGTGGAGTGCGTGAAAATGCTAAGAACCTCTATATTGTTGAAATTAACGACTCCATCTTTATCTTGGATGCTGGTCTAAGGTATCCTGAGAATGAACAATTAGGTGTTGACTTTGTTATCCCTAATTTAGATTATTTGGTTGAAAATAAAGACCGTATCCAGGGGATTTTCTTGACGCATGGGCACGCTGATGCCATTGGTGCCCTACCTTATATCTTGCAAGACGCCAAAGTACCAGTCTTTGGGTCATCACTTACTATTGAGTTAGCTAAGCTTTTTGTAAAAAATGCTGGCGTTAATAAATTCAATAATTTCCATGTCATTGACTCAGAAACTGAAATTGAATTCGATGATGCAGTGGTCTCATTCTTTAAGACAACTCACTCTATCCCAGAATCAATGGGGATTGTTCTTGGGACGGACCGAGGCAATATTGTCTATACTGGTGATTTCAAGTTTGACCAAGCTGCTCGCCCTTACTACAAAACTGATTTAGGTCGCTTGGCTGAAATCGGTCGAGAAGGTGTCTTGGCCCTCTTGTCAGACTCAGCAAATGCGACAAGTACTGAACAAACAGCTTCAGAAGCAGAAGTTGGCCAAGAGATTGACCAAGTTATTGCCGATGCAGATGGACGTGTTATTATTGCAGCAGTTGCCTCAAACTTGGTTCGTATTCAACAAGTCTTTGATTCAGCTGCCGAACATGGACGTCGCGTTGTTCTTACAGGTTTTGACGTTGAAAATATTGTTCGTACAGCTATCCGTCTTAAGAAATTGACTGTGGAGCATGAGAAGCTCATTGTTAAACCAAAGGATATGAACAAGTTCGAAGACCACGAGTTGATTATCCTCGAAAATGGACGTATGGGAGAGCCAATCGACGGTCTTCAAAAAATGGCAGTTGGCTGTCACCGTTATGTTCAAATCAAAGATGGGGACTTAGTTTATATCGTAACCACACCAAGTATTGCTAAAGAAGCAGCGGTCGCACGCGTAAACAATGCTATCTATAAGGCTGGTGGGGCTGTTAAGATGATTACACAGAATCTTCGTGTATCTGGACATGCCAATGCTCGTGAGCTTCAATTGATGCTGAATCTTCTTCGTCCACAGTATCTTTTCCCAGTCCAAGGGGAGTACCGTGAACTTCAAGCTCATGCTGAGTTAGCCCTTGAAGTTGGGATCCTTCCAGAAAACATCTACATTGTTAAGCGTGGAGATATCATGCACTTATCAGAGGACCAAGGTTTCCTTCATGAAGGTACTGTCCCAGCTGGTGATGTTATGATTGATGGTAATGCTATCGGTGATGTTGGAAATATCGTGCTTCGTGACCGTAAGGTCTTGTCTGAAGACGGTATCTTTATCGTTGCTATTACAGTCAATAAAAAGGAGCGTAAGATTGTCTCTAAAGCGCGTGTCAATACGCGTGGCTTCGTCTATGTTAAAAAGAGCCGTGATATCCTAAGTGAGTCTGCTGATATTGTCAATGCAACTGTTGAAAATTACTTGGCAGGAGATAATTTTGATTGGGGAGAACTTAAAGGTGCGGTTCGCGATGATGTGGCTAAGTTCCTCTTTGACCAAACCAAACGTCGCCCAGCAATTCTTCCAGTTGTTATGGAAGTACGTTAA

Protein sequence:

MSDIKIIALGGVRENAKNLYIVEINDSIFILDAGLRYPENEQLGVDFVIPNLDYLVENKDRIQGIFLTHGHADAIGALPYILQDAKVPVFGSSLTIELAKLFVKNAGVNKFNNFHVIDSETEIEFDDAVVSFFKTTHSIPESMGIVLGTDRGNIVYTGDFKFDQAARPYYKTDLGRLAEIGREGVLALLSDSANATSTEQTASEAEVGQEIDQVIADADGRVIIAAVASNLVRIQQVFDSAAEHGRRVVLTGFDVENIVRTAIRLKKLTVEHEKLIVKPKDMNKFEDHELIILENGRMGEPIDGLQKMAVGCHRYVQIKDGDLVYIVTTPSIAKEAAVARVNNAIYKAGGAVKMITQNLRVSGHANARELQLMLNLLRPQYLFPVQGEYRELQAHAELALEVGILPENIYIVKRGDIMHLSEDQGFLHEGTVPAGDVMIDGNAIGDVGNIVLRDRKVLSEDGIFIVAITVNKKERKIVSKARVNTRGFVYVKKSRDILSESADIVNATVENYLAGDNFDWGELKGAVRDDVAKFLFDQTKRRPAILPVVMEVR

GenBank Info

locus_tag - FAM13496-i1-1.1_001452
inference - COORDINATES: similar to AA sequence:RefSeq:NP_688195.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease J
protein_id - extdb:FAM13496-i1-1.1_001452

Gene Locus

Located on scaffold FAM13496-i1-1_scf21

FAM13496-i1-1.1_001451
FAM13496-i1-1.1_001453