update range to 10000 bp
locus tag: FAM13496-i1-1.1_001557 genome: FAM13496-i1-1.1
species: Streptococcus thermophilus taxid: 1308

Annotations

Type Name Description Pathways
KEGG reaction
 R02749 2-deoxy-D-ribose 1-phosphate 1,5-phosphomutase; 2-Deoxy-D-ribose 1-phosphate <=> 2-Deoxy-D-ribose 5-phosphate kornec00030kornec01100
KEGG reaction
 R01057 D-Ribose 1,5-phosphomutase; alpha-D-Ribose 1-phosphate <=> D-Ribose 5-phosphate kornec00030kornec00230kornec01100
Gene Product
 phosphopentomutase
Ortholog
 N0.HOG0003814 phosphopentomutase
KEGG gene
 K01839 deoB; phosphopentomutase [EC:5.4.2.7] kornec00030kornec00230kornec01100
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0016868 intramolecular transferase activity, phosphotransferases
Gene Ontology
 GO:0016866 intramolecular transferase activity
Gene Ontology
 GO:0016853 isomerase activity
Gene Ontology
 GO:0008973 phosphopentomutase activity
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:deoB
Eggnog Ortholog
 EO:COG1015
Eggnog Description
 ED:Phosphotransfer between the C1 and C5 carbon atoms of pentose
EC Number
 EC:5.4.2.7 phosphopentomutase; phosphodeoxyribomutase; deoxyribose phosphomutase; deoxyribomutase; phosphoribomutase; alpha-D-glucose-1,6-bisphosphate:deoxy-D-ribose-1-phosphate phosphotransferase; D-ribose 1,5-phosphomutase kornec00030kornec00230kornec01100

Occurs in the following pathway maps:

Pathway Description
kornec00030 Pentose phosphate pathway
kornec00230 Purine metabolism
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 41.0 %):

ATGTCCAAATTTAATCGAATGCATTTAATCGTTCTTGATTCAGTAGGTATTGGTGCAGCTCCAGATGCTAATAATTTTGTCAATGCTGGTGTTCCTGACGGAGCTTCAGATACCCTTGGACACATTTCTAAAACTGTTGGTTTGAATGTGCCAAACATGGCTAAACTTGGTCTTGGAAATATTCCTCGCGAACAACCCTTGAAAACTGTTCCAGCTGAAAGCAATCCAACTGGTTACGCAACTAAGTTAGAAGAAGTCTCTCTTGGAAAAGATACCATGACAGGTCACTGGGAAATCATGGGACTTAATATTACAGAACCTTTTGATACTTTCTGGAATGGATTCCCAGAGGAAATTCTTACTCAAATTGAAGAATTCTCAGGGCGTAAGGTTATTCGTGAAGCCAATAAACCTTATTCTGGTACAGCAGTTATCGATGACTTCGGACCACGCCAAATGGAAACTGGTGAGTTAATTATTTATACATCAGCTGACCCAGTTCTTCAAATCGCAGCTCACGAAGATATTATTCCTGTTGAAGAATTGTATCGTATTTGCGAATTTGCTCGTTCTATCACTTTGGAACGTCCAGCTCTTCTTGGTCGTATCATTGCTCGTCCTTACGTTGGTGAGCCTGGGAACTTTACTCGTACATCTAACCGTCGTGACTTGGCTATTTCACCATTTGCTCCAACTGTTTTGGACAAATTGAACGAAGCAGGAATTGACACTTACTCAGTTGGTAAGATTAGTGATATCTTCAATGGTGAAGGTATCAACCACGATATGGGTCATAACAAATCAAATAACCACGGTGTGGACAATTTGATTAAGGCTATGACATCAGAAGACTTTAAACATGGTTTCTCTTTCACAAACTTGGTAGACTTTGATGCCCTTTACGGACATCGTCGTAATCCACAGGGCTACCGCGATTGCTTGCATGAATTTGACGAGCGCTTGCCTGAAATTATCGCTGCTATGAAAGAAGATGATCTCTTGATGATCACTGCAGACCATGGTAATGACCCAACTTATGCTGGTACAGACCATACTCGTGAATATATCCCATTCTTGGCTTACAGCCCTTCCTTCAAATCTAGTGGCTTGATTCCAGTTGGACATTTCGCTGATATCTCAGCAACAATTGCGGATAACTTCGGTGTTGAGAAAGCCATGATTGGTGAAAGTTTCTTGGATAAACTTGTCTAA

Protein sequence:

MSKFNRMHLIVLDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKLGLGNIPREQPLKTVPAESNPTGYATKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTQIEEFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEDIIPVEELYRICEFARSITLERPALLGRIIARPYVGEPGNFTRTSNRRDLAISPFAPTVLDKLNEAGIDTYSVGKISDIFNGEGINHDMGHNKSNNHGVDNLIKAMTSEDFKHGFSFTNLVDFDALYGHRRNPQGYRDCLHEFDERLPEIIAAMKEDDLLMITADHGNDPTYAGTDHTREYIPFLAYSPSFKSSGLIPVGHFADISATIADNFGVEKAMIGESFLDKLV

GenBank Info

locus_tag - FAM13496-i1-1.1_001557
EC_number - 5.4.2.7
inference - COORDINATES: similar to AA sequence:RefSeq:YP_003445990.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - phosphopentomutase
protein_id - extdb:FAM13496-i1-1.1_001557

Gene Locus

Located on scaffold FAM13496-i1-1_scf23

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM13496-i1-1.1_001556
FAM13496-i1-1.1_001558