update range to 10000 bp
locus tag: FAM13496-i1-1.1_001631 genome: FAM13496-i1-1.1
species: Streptococcus thermophilus taxid: 1308

Annotations

Type Name Description Pathways
KEGG reaction
 R02484 deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase; deoxyuridine:orthophosphate ribosyltransferase; Deoxyuridine + Orthophosphate <=> Uracil + 2-Deoxy-D-ribose 1-phosphate kornec00240kornec01100
KEGG reaction
 R02296 cytidine:orthophosphate alpha-D-ribosyltransferase; Cytidine + Orthophosphate <=> Cytosine + alpha-D-Ribose 1-phosphate kornec00240kornec01100
KEGG reaction
 R01876 uridine:phosphate alpha-D-ribosyltransferase; Uridine + Orthophosphate <=> Uracil + alpha-D-Ribose 1-phosphate kornec00240kornec01100
KEGG reaction
 R01570 thymidine:phosphate deoxy-alpha-D-ribosyltransferase; Thymidine + Orthophosphate <=> Thymine + 2-Deoxy-D-ribose 1-phosphate kornec00240kornec01100
Gene Product
 pyrimidine-nucleoside phosphorylase
Ortholog
 N0.HOG0003780 pyrimidine-nucleoside phosphorylase
KEGG gene
 K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] kornec00240kornec01100
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0016763 pentosyltransferase activity
Gene Ontology
 GO:0016758 hexosyltransferase activity
Gene Ontology
 GO:0016757 glycosyltransferase activity
Gene Ontology
 GO:0016740 transferase activity
Gene Ontology
 GO:0009032 thymidine phosphorylase activity
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004645 1,4-alpha-oligoglucan phosphorylase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:pdp
Eggnog Ortholog
 EO:COG0213
Eggnog Description
 ED:Catalyzes the reversible phosphorolysis of thymidine
EC Number
 EC:2.4.2.2 pyrimidine-nucleoside phosphorylase; Py-NPase; pdp (gene name) kornec00240kornec01100

Occurs in the following pathway maps:

Pathway Description
kornec00240 Pyrimidine metabolism
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 37.2 %):

TTGGTAATTTCTCTTATTGAACAGTCAGAACATCTTGTTAAAGCGGACAAACTTCTTTGTGCACTTAGAGACGTGACTGCTACAGTAGATTCAATTCCTTTGATTGCAAGTTCTGTTATGTCTAAGAAGATTGCTGCAGGAGATAAGATCCTTTTAGACGTTACGGTAGGTCAAGGTGCTTTTATGAAGAGTTTGGAAGAGGCTGAGCACCTTTCTGAAACAATGGTTTCCTTAGGCCGTGAAATGGGTCGAGAAACAATTGCAGTGATTACAGATATGAGTCAACCACTTGGTAGAGCTATTGGTAACTGTCTTGAAATTTTTGAAGCTATTGAAATCATGCAAGGTAAGGGCCGTGCAGACATTACAGAGTTCATTTGTGAATTAGCAGAGATTATTTTAAATTTGACAGGAGTTGAATCGAGTTCAGATAAAATTCGTCAACATTTAGTGGAGGGTGTAGCTCTATCTAAATTTGAAGAACTTATTGAAGCTCAAGGTGGAGACTTGGATGACCTTTATCGTAAGAGTGCAGCAGCTTATGTCACAGAAGTTTTGGCTGATGAAGAGAGTTATATTTCTGAACTACCAGCTTTAGCATTTGGTAAATATGCTATGAAATTAGGGGCTGGTCGTACTACTAAAGCTGACACTCTTAATTATGAAACAGGGATTGTTTTTGAGAAAAAAGTGGACGATTCTGTCAAAGTAAGTGAAACTGTTGATAATATTTATAGTGACCAAGCCCTAATCGAAGAGCTAATTGATGAATTTAAAGCTTATATTACAAATCAGCAATGA

Protein sequence:

MVISLIEQSEHLVKADKLLCALRDVTATVDSIPLIASSVMSKKIAAGDKILLDVTVGQGAFMKSLEEAEHLSETMVSLGREMGRETIAVITDMSQPLGRAIGNCLEIFEAIEIMQGKGRADITEFICELAEIILNLTGVESSSDKIRQHLVEGVALSKFEELIEAQGGDLDDLYRKSAAAYVTEVLADEESYISELPALAFGKYAMKLGAGRTTKADTLNYETGIVFEKKVDDSVKVSETVDNIYSDQALIEELIDEFKAYITNQQ

GenBank Info

locus_tag - FAM13496-i1-1.1_001631
inference - COORDINATES: similar to AA sequence:RefSeq:WP_002947582.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - pyrimidine-nucleoside phosphorylase
protein_id - extdb:FAM13496-i1-1.1_001631

Gene Locus

Located on scaffold FAM13496-i1-1_scf26

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM13496-i1-1.1_001630
FAM13496-i1-1.1_001632