update range to 10000 bp
locus tag: FAM19038-p1-1.1_001823 genome: FAM19038-p1-1.1
species: Acidipropionibacterium jensenii taxid: 1749

Annotations

Type Name Description Pathways
Gene Code
 orn
Gene Product
 oligoribonuclease
Ortholog
 N0.HOG0002281 oligoribonuclease
KEGG gene
 K13288 orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-] kornec03008
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
Gene Ontology
 GO:0090501 RNA phosphodiester bond hydrolysis
Gene Ontology
 GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0040007 growth
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters
Gene Ontology
 GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
Gene Ontology
 GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008408 3'-5' exonuclease activity
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004540 ribonuclease activity
Gene Ontology
 GO:0004532 exoribonuclease activity
Gene Ontology
 GO:0004527 exonuclease activity
Gene Ontology
 GO:0004518 nuclease activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0000175 3'-5'-exoribonuclease activity
Eggnog Protein
 EP:orn
Eggnog Ortholog
 EO:COG1949
Eggnog Description
 ED:3'-to-5' exoribonuclease specific for small oligoribonucleotides
EC Number
 EC:3.1.-.- -

Occurs in the following pathway maps:

Pathway Description
kornec03008 Ribosome biogenesis in eukaryotes

Sequences

Nucleotide sequence (GC-content: 67.1 %):

GTGAACAACATGCTGGTGTGGATCGACTGCGAGATGACCGGGCTCGACCTGGCCCATGACGGGCTCATCGAGGTGGCCGCCCTGGTCACCGACGGTGACCTCAACGTGATGGGTGAGGGGGTCGACGTCATCATCCGCCCCAGGCCGGAGTGGTTGGAGCACATGAACGACTTCGTGCGCGGCATGCACACCCATTCGGGACTGCTCGACGAGCTGGACTCCGGGATGTCGATGGAGGAGGCCCAGAAGCAGGTCCTCGACTACATCAAGGAGTGGGTGCCCGAGGCCGGCAAGGCCCCGCTGGCCGGCAACTCCATCGGGACCGACCGGTCCTTCCTGGCCAAGGACATGCCCGAGCTCGAGGGGTACACCCACTACCGCAATGTCGATGTCTCCTCCATCAAGGAGCTGGCGAAGCGCTGGTACCCGGCCGCCTACCGGAACTCCCCGACCAAGCAGGGCAACCACCGCGCGCTGGCCGACATCGAGGAGTCGATCGAGGAGTTGATGTACTGGCGCGCGGCGCTCATGGTGCCGGCCCCGGGGCCGGACGCCGCCACTGCCAGGACCATCGCCGCCAGGTGCCAGGGGGCTCTCACCGGAGCCGGTCGCACCGCCGACTGA

Protein sequence:

MNNMLVWIDCEMTGLDLAHDGLIEVAALVTDGDLNVMGEGVDVIIRPRPEWLEHMNDFVRGMHTHSGLLDELDSGMSMEEAQKQVLDYIKEWVPEAGKAPLAGNSIGTDRSFLAKDMPELEGYTHYRNVDVSSIKELAKRWYPAAYRNSPTKQGNHRALADIEESIEELMYWRAALMVPAPGPDAATARTIAARCQGALTGAGRTAD

GenBank Info

gene - orn
locus_tag - FAM19038-p1-1.1_001823
EC_number - 3.1.-.-
inference - COORDINATES: protein motif:HMM:NF003765.0
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - oligoribonuclease
protein_id - extdb:FAM19038-p1-1.1_001823

Gene Locus

Located on scaffold FAM19038-p1-1_scf1

FAM19038-p1-1.1_001822
FAM19038-p1-1.1_001824