update range to 10000 bp
locus tag: FAM19038-p1-1.1_001852 genome: FAM19038-p1-1.1
species: Acidipropionibacterium jensenii taxid: 1749

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0002255 Fpg/Nei family DNA glycosylase
KEGG gene
 K10563 mutM, fpg; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] kornec03410
KEGG gene
 K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] kornec03410
Gene Ontology
 GO:1901363 heterocyclic compound binding
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140097 catalytic activity, acting on DNA
Gene Ontology
 GO:0097506 deaminated base DNA N-glycosylase activity
Gene Ontology
 GO:0097159 organic cyclic compound binding
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0070887 cellular response to chemical stimulus
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042221 response to chemical
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034599 cellular response to oxidative stress
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0019104 DNA N-glycosylase activity
Gene Ontology
 GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
Gene Ontology
 GO:0016798 hydrolase activity, acting on glycosyl bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006979 response to oxidative stress
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006289 nucleotide-excision repair
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0004844 uracil DNA N-glycosylase activity
Gene Ontology
 GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003697 single-stranded DNA binding
Gene Ontology
 GO:0003690 double-stranded DNA binding
Gene Ontology
 GO:0003677 DNA binding
Gene Ontology
 GO:0003676 nucleic acid binding
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
Gene Ontology
 GO:0000702 oxidized base lesion DNA N-glycosylase activity
Gene Product
 Fpg/Nei family DNA glycosylase
Eggnog Protein
 EP:nei1
Eggnog Ortholog
 EO:COG0266
Eggnog Description
 ED:Belongs to the FPG family
EC Number
 EC:4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase; AP lyase; AP endonuclease class I; endodeoxyribonuclease (apurinic or apyrimidinic); deoxyribonuclease (apurinic or apyrimidinic); E. coli endonuclease III; phage-T4 UV endonuclease; Micrococcus luteus UV endonuclease; AP site-DNA 5'-phosphomonoester-lyase; X-ray endonuclease III
EC Number
 EC:3.2.2.23 DNA-formamidopyrimidine glycosylase; Fapy-DNA glycosylase; deoxyribonucleate glycosidase; 2,6-diamino-4-hydroxy-5N-formamidopyrimidine-DNA glycosylase; 2,6-diamino-4-hydroxy-5(N-methyl)formamidopyrimidine-DNA glycosylase; formamidopyrimidine-DNA glycosylase; DNA-formamidopyrimidine glycosidase; Fpg protein

Occurs in the following pathway maps:

Pathway Description
kornec03410 Base excision repair

Sequences

Nucleotide sequence (GC-content: 71.2 %):

TTGCCAGAGGGGCACGTCATCCACCGTCTTGCAGGCGCCATCGAGGACGCCTTCGCGGGCGAGGAGGTGACCGTCACCTCCCCCCAGGGCCGCTTCGCGGTGGAGGCCGCCCATCTCAACGGCAGCCGGCTGCGCGGGGCACAGGCCTGGGGCAAGCACCTGCTCATCGACTTCGCCGCCGAGGGAGCCCACCTGGTCCACATCCACCTCGGACTCATCGGCAGGTTCACGGTGGGGCCGATCACCCCGGTGCACGGCCAGGTGAGACTGCGCATCGAGGACGCCGTGAGCTCTGCCGATCTGCGAGGACCGCAGTGGTGCCGACTGCTCAGCGACGAGGAGTGGGAGGCCGTCCTGTCCACCGTCGGCTCCGACCCGATCCGCCCCGATGCCGATCCGGAGAAAGCCTGGCGGGCCATCCACCGCAGCACCCGGGCGATCGGGGTGCTGCTGATGGACCAGTCGATCACCGCCGGGGTGGGCAACATCTACCGGGCCGAGGTGCTCTTCCGCCACCGGATCGACCCGATGACCCCCGGGAACAGACTGGCGCACGCGACCTGGCAGGCCATCTGGGAGGACCTGGTGGTCCTGATGCGCCGCGGGGTGGCCACCGGTCGCATCGACACCGTCCGGCCCGAGCACACCCCGGAGGCGATGGGGCGGCCCCCTCGCCTCGACCGGCACGGCGGCGAGGTCTACGTCTACCGCCGGGACGGACAGCCCTGCCTGGTCTGCGGAACCACCGTGCGCCGGACCAATCTGGCCGGACGCCACCTGTTCTGGTGCCCGCGCTGCCAGCGGAGGCACCGATGA

Protein sequence:

MPEGHVIHRLAGAIEDAFAGEEVTVTSPQGRFAVEAAHLNGSRLRGAQAWGKHLLIDFAAEGAHLVHIHLGLIGRFTVGPITPVHGQVRLRIEDAVSSADLRGPQWCRLLSDEEWEAVLSTVGSDPIRPDADPEKAWRAIHRSTRAIGVLLMDQSITAGVGNIYRAEVLFRHRIDPMTPGNRLAHATWQAIWEDLVVLMRRGVATGRIDTVRPEHTPEAMGRPPRLDRHGGEVYVYRRDGQPCLVCGTTVRRTNLAGRHLFWCPRCQRRHR

GenBank Info

locus_tag - FAM19038-p1-1.1_001852
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015070984.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - Fpg/Nei family DNA glycosylase
protein_id - extdb:FAM19038-p1-1.1_001852

Gene Locus

Located on scaffold FAM19038-p1-1_scf1

FAM19038-p1-1.1_001851
FAM19038-p1-1.1_001853