update range to 10000 bp
locus tag: FAM19038-p1-1.1_002112 genome: FAM19038-p1-1.1
species: Acidipropionibacterium jensenii taxid: 1749

Annotations

Type Name Description Pathways
Gene Product
 UvrD-helicase domain-containing protein
Ortholog
 N0.HOG0002601 UvrD-helicase domain-containing protein
KEGG gene
 K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] kornec03440
Gene Ontology
 GO:0071944 cell periphery
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0030312 external encapsulating structure
Gene Ontology
 GO:0016020 membrane
Gene Ontology
 GO:0005886 plasma membrane
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005618 cell wall
Gene Ontology
 GO:0005575 cellular_component
Eggnog Protein
 EP:recB
Eggnog Ortholog
 EO:COG1074
Eggnog Description
 ED:A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase
EC Number
 EC:3.1.11.5 exodeoxyribonuclease V; Escherichia coli exonuclease V; E. coli exonuclease V; gene recBC endoenzyme; RecBC deoxyribonuclease; gene recBC DNase; exonuclease V; gene recBCD enzymes

Occurs in the following pathway maps:

Pathway Description
kornec03440 Homologous recombination

Sequences

Nucleotide sequence (GC-content: 72.7 %):

ATGACGGACATCCCTCAGACGGGCCGACCCTTCGACATCACCGCCGACCTGCCCCACGGCACCACCCTTCTCCAGGCCAGTGCCGGCACCGGGAAGACCTGGGCGATCGCCGCTGTGGTGGCCCGCGCGGTCGCCTCCGGTCAGGTGAGCATGGACCGGGTGCTGCTGGTGACCTTCAACCGGTCGGCGGCGCGACAGCTGAGGTCGCGGGTCCACGCGAGACTGGTCTCGGCCCACCGGCTGCTCACCGGGGGGCGGGACGCCGCAGACGAACTGGACACCGTCCTGGCGTCGCGACCCGACGGCGAGCGCGCCCAGATGGCGGACCGGCTGCGGGCGGGTCTGGACGCCTTCGAGGACGCCACCATCACCACCACCCACGAGTTCGCCTCGAGGATGCTCGACGAGCTGGGGGTGCTGGCCGACCACGACCGGTCCTCACGGCTGCTGGCCGACGCGGGACCTCTCACCGACCAGGTGGCCGCCGACCTGTACCTGAGGGCGAATCTGGACCAGGACAGGCCGCCCTCCCCCGCACCCTCTCTTCGACTGGCCCGACAGGTCGCCGTCCAGTACCGCGAGGTGGAGATCGCAGAACCCTCGGGGACCCCCCGATCCCTGGACCGGACGCGGTGGGCCCGGGCGGTGCGGGCCGAGGTGGACCGGCGCAGCAGGGCTCAGGGCTGGCACACCTTCGACGACCTGATCGCCGACCTGGCCCACGCACTGGCCGATCCGGACCGCGGTCCGGCGGCGGTCCGGACGCTGTCGACGCGCTTCTGCCTGGTGATGGTCGACGAGTTCCAGGACACCGACCCGCTCCAGTGGGCGGCCCTCGACCTGGCTTTCCGGGGCAGGGTCGACCTGTGGCTGATCGGCGACCCCAAGCAGTCCATCTACGCCTTCCGGGGAGCCGACATCCACTCCTACCTGGAGGCCACCGAACGGGTCGACCGGGTGCTGGCGCTGAGGGTCAACAGGCGCGCCGACCAGCCGGTGGTGGCCGGCATCTCGCACCTCTTCGGCCCGGCCCTGCTGGGCGACTCCAGGATCCGCCTGGAACCGGTGGAGGCCTGGCACACCGGCAGCCGGCTGGGATGCCGGGCCACCGATGGACACCGCTACAGCTGGGAGCGACCGGTTCAGCTGCGCTGCATCCGGTCAGAGCGGGGCTCGATGGACGGTGCCACCGCCGACCGGCGGATCGCCGAGGACCTGGCCAACCAGGTGGTGATGATGCTGGAGGGAGGCTCCACCTGGACCGATGACGACGGCCGGGTGCGTCCCCTGAGCGCCCCCGACATCGCCGTTCTGGTGCGCACCCGACGGCGGGGTTCCCAGATCCGGGCGGCGCTGGCCTCGGTCGGCCAGCCGGCCGTCTTCAGCGGGGACGAGTCGGTGTGGAGCAGTGCCGCCACCGCGGACCTGATCGACCTGCTGGACGCTCTGTCGCGACCCGAACCGGCGGTGATGGCACGACTGGCCCTGTCGCCACTGGGTGGGGGTCGTCCCGAGGAGATGGTGCGTCCCGACTCACGGGTCAGGCCCGATCTCGCGGTGTCGATCGGATCGTGGGCCCGGCGCTGGGACCAGCTGGGCCCCTGGGGGCTGGTCGACGAGGCGGTGCGACGACCCGGGGTGATGCCCTCGATGCTCTCCGATCCTCGCGGCGAGCGGTATCTCACCGACCTGCGCCAGGCGGCCCAGTTGTCGGCCACCGAGTCCCGGGACCGGGCGGACGGCTCCCTCGCCGGCCCCGAGGGAGCCGGCCGGCCGGGCCCGGCCGAGCTCGCCGGGTGGCTGCGGGACCAACGGGACTCGGCCTCGGTGGAGTCCCCGCGACGCCTGGAGACCGATCGGCGGGCGGTGACGATCATGACCATTCATCAGGCCAAGGGGCTGGGTTTCCCGGTCGTCCTGCTGCCCGACGCGGCCCGCAGCTGGCCCATGAGGGACAGGGACGAGCCGCTGGTCTGGCATGACGGGGCCCGACGGGTCCTCGACCTGGGAGGCCAGGGCCCCCGCCGGGAGCAGGCGTGGGAGTCGCATCTGGCCGACCAGCGGGCCGAGGACCTGCGCACCCTCTACGTCGGACTCACCCGGGCCCGGTCCGCCCTGCGGCTGTGGTGGGCCCCGGACCGGCGACAGCACCGTGGTTCGCCGCTGCACCGGCTGCTCGCCTTCGACCACCTGTCGGTGCAGACCCCCGGCCCCGGCCAGCAGGACGTCGATCCGGCCCGGCTGAGCTGGCTCGACCCCTCCCTCATCGAGGTGGTCCAGGTGCCTCGCCAGATGCTGCTGACCCGCCATGACCGGGCGGCGGAGTCCGCGGTGGCGGCTCCTCGCAGCCTGGACCGACGGATCGACCGCTCCTGGGGACGCACCTCCTACTCCGGTCTGACGGACGGTCTGCACACCTTCGGTGTCGATCCCCGGGCCAGTGGTGCGGACCGACCGGCAGGCACCGATGAGCCGCAGGAGGCCGAGACCTCGACGCAGACGACCGAGGCCATCGGCGGGCAGGACCCGGGGTCGGGGCTGTGCGCGATGCCCGGCGGAACCGCCTTCGGCACCCTGGTGCACGCCATTCTGGAGCGGGTCCGTCCGGTCGGCGAGGGGCTGTCCGCCGATGTTGCGGACCAGACCTCGGCGGCTCTGGCCCAGACCCCCCTTCCGGGGGTGAGCCCCGAGGATCTCGCCGGGGGCCTGGTCGACGTGATGCGCACCCCGCTGGGCGAGCTCACCTCGGGCCTGAGACTGTGCGACATCGGCGAGGGGAACCGGCTCGCCGAGCTCGGCTTCGAGTTGGCGATGGCGCCCGACTCCCGGCACGCCTCGGTGCTGGCCGACATCGCGGCCGCCCTGAACGACCCCGGTCTGGTGTCCCCCGAGGATCCGCTGGCCGACTACGGACGCGTGCTGGCCGACTCCCCCGCCTCCGACCGGGTGCTGGCCGGATTCCTCACCGGCTCCCTGGACGCCGTGCTGAGACTGCCCGACCAGCGCCATGTCGTCGTCGACTACAAGACGAACCGGGTCCCGCTGCCTCCCGGGGAGTCGCTGGAGCCTCGGCACTACGGCCACGCGACGATGACGCAGATGATGATCGACTCGCACTATCCCCTCCAGGCGATCCTCTACAGCGCCGCGCTGCACCGCTTCCTGGCGGCCCGACTGCCCGGGTACGATCCCGCGCGCCACCTCGGCGGGGTGGGCTATCTGTTCGTCCGGGGAATGACCGGCGACACCCCTGCACCGGCAGCCCCGGTGCTGGGCGGCTCTGTTCAGGGCAGCTCGACCTCGGGCAGCTCGCTCCAGGGCGACTCGGCCCGGGACACCCCCACCGGGGTGTTCAGCTGGTACCCCCGCCCCGAGCTGGTGGTGCGGGTCTCCGAGCTGCTGTGGCGCAGCAGCCCCGATCGCACCGACTCGCCCTCGGCTGCTCAGGAGGGCCGCCATGACTGA

Protein sequence:

MTDIPQTGRPFDITADLPHGTTLLQASAGTGKTWAIAAVVARAVASGQVSMDRVLLVTFNRSAARQLRSRVHARLVSAHRLLTGGRDAADELDTVLASRPDGERAQMADRLRAGLDAFEDATITTTHEFASRMLDELGVLADHDRSSRLLADAGPLTDQVAADLYLRANLDQDRPPSPAPSLRLARQVAVQYREVEIAEPSGTPRSLDRTRWARAVRAEVDRRSRAQGWHTFDDLIADLAHALADPDRGPAAVRTLSTRFCLVMVDEFQDTDPLQWAALDLAFRGRVDLWLIGDPKQSIYAFRGADIHSYLEATERVDRVLALRVNRRADQPVVAGISHLFGPALLGDSRIRLEPVEAWHTGSRLGCRATDGHRYSWERPVQLRCIRSERGSMDGATADRRIAEDLANQVVMMLEGGSTWTDDDGRVRPLSAPDIAVLVRTRRRGSQIRAALASVGQPAVFSGDESVWSSAATADLIDLLDALSRPEPAVMARLALSPLGGGRPEEMVRPDSRVRPDLAVSIGSWARRWDQLGPWGLVDEAVRRPGVMPSMLSDPRGERYLTDLRQAAQLSATESRDRADGSLAGPEGAGRPGPAELAGWLRDQRDSASVESPRRLETDRRAVTIMTIHQAKGLGFPVVLLPDAARSWPMRDRDEPLVWHDGARRVLDLGGQGPRREQAWESHLADQRAEDLRTLYVGLTRARSALRLWWAPDRRQHRGSPLHRLLAFDHLSVQTPGPGQQDVDPARLSWLDPSLIEVVQVPRQMLLTRHDRAAESAVAAPRSLDRRIDRSWGRTSYSGLTDGLHTFGVDPRASGADRPAGTDEPQEAETSTQTTEAIGGQDPGSGLCAMPGGTAFGTLVHAILERVRPVGEGLSADVADQTSAALAQTPLPGVSPEDLAGGLVDVMRTPLGELTSGLRLCDIGEGNRLAELGFELAMAPDSRHASVLADIAAALNDPGLVSPEDPLADYGRVLADSPASDRVLAGFLTGSLDAVLRLPDQRHVVVDYKTNRVPLPPGESLEPRHYGHATMTQMMIDSHYPLQAILYSAALHRFLAARLPGYDPARHLGGVGYLFVRGMTGDTPAPAAPVLGGSVQGSSTSGSSLQGDSARDTPTGVFSWYPRPELVVRVSELLWRSSPDRTDSPSAAQEGRHD

GenBank Info

locus_tag - FAM19038-p1-1.1_002112
inference - COORDINATES: similar to AA sequence:RefSeq:WP_007433461.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - UvrD-helicase domain-containing protein
protein_id - extdb:FAM19038-p1-1.1_002112

Gene Locus

Located on scaffold FAM19038-p1-1_scf1

Cellular location expand

Responsible annotations:
SL-0041: GO:0005618 cell wall
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
SL-0039: GO:0005886 plasma membrane
SL-0162: GO:0016020 membrane
FAM19038-p1-1.1_002111
FAM19038-p1-1.1_002113