locus tag:
FAM19038-p1-1.1_002148
genome:
FAM19038-p1-1.1
species:
Acidipropionibacterium jensenii
taxid:
1749
Annotations
| Type |
Name |
Description |
Pathways |
|
Gene Product
|
transcription termination factor Rho |
|
|
|
Ortholog
|
N0.HOG0001817 |
transcription termination factor Rho |
|
|
KEGG gene
|
K03628 |
rho; transcription termination factor Rho |
kornec03018 |
|
Eggnog Protein
|
EP:rho |
|
|
|
Eggnog Ortholog
|
EO:COG1158 |
|
|
|
Eggnog Description
|
ED:Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec03018
|
RNA degradation |
Sequences
Nucleotide sequence (GC-content: 69.6 %):
GTGACACAGTCCACACACGGGGCCGCCTCGACCGGGGCGTCCCAGGGCACCGACCTGTCGGCCAGACTCCTGCCGGAGCTGCGCGCGATCGGGTCCCAGATGGGCATCAAGGGAGCCCGCACGATGCGCAAGGCCGACCTGGTCGCAGCGATCAGGGAGGGCGGGTTCTCCCCGGCCTCCGCCGGCTCCACCGCCGCCCCCGCCAGCGCGAAGGCCGCCGTCGGCCACGAGTCCGGCAGCGCTCCGTCGAGCGCCGACCAGGCCTCGAACGACCAGGCCGGCAGCGTCGAGCAGGCCAGTGGCGTCGAGCAGGCACCGCGTCGGCGTCGTGGTCGGGAGGGCGGCCAGCGCCGCTCCGAGGATCAGTCCCGCCCCGACCAGAACACGGCCGATCAGAACAGGGACGACCAGAGCAGGGACGATCAGAGCAGGGCCGAGCGGCCCCGTTCCGATCAGCGCCGTTCGCGGGACCAGAACCGTCCTGAGCAGAACCGCTCCGAGCAGGGTCGTTCGGAGCGTCATCAGGACCGGCAGTCCCAGAACGGCCAGAACCGTGGTGAGGAGCGGTCCCGGCGCCGCCGGGCAAACCCCCAGCGGACGGCTCAGGAGGACGGTCCGGAGCTGTCCACCAGCCAGGTGAGCGACGAGGTGGGGGCCCGCCTGGACGCCCTGTCCCATCATCAGGGCGGCCACCAGGACACCGCCGAGCACGAGCATCAGGAGTCGTCTGTGACATCGTCGGGCGAGGATGACTACAACGGCGGTCGGCGCTCTCGTCGGCGCCGCCAGCGCGATCGTCAGAACAGGCGCAAGCGCGGCGGGGACCACGGCGGCGGCGACGAGCCTGAACTCAGCGTCCGCGAGGACGACGTCCTCGTCCCGTGCTCCGGAATCCTCGACATCCGCGACCAGTACGCCTTCGTGCGGACCAGCGGCTACCTGCCCGGTCCCAGCGACGCCTATGTGGCGATGAACCTGGTGCGCAAGCAGGGGCTGCGCAAGGGAGACGTCATCACCGGCGCGATGCGCGCCAAGCGAGAGGGGGAGAGGCGCGAGAAGTTCGCCCCTCTGGTCCGTCTCGACACCGTCAACGGCGCCGACCCCGAGCAGATGCGCAGCCGCGCAGAGTTCTCCCGGCTCACCCCTCTCTACCCTCAGGAGAGGCTGCGGCTGGAGACCGACGCGAAGAACATGACCGGCCGGATCATCGACCTGGTCAGCCCGATCGGCAAGGGTCAGCGCGGTCTCATCGTCTCCCCGCCGAAGGCCGGCAAGACGATGATCATGCAGTCCATCGCGAACTCCATCACCCAGAACAACCCCGAGGTCCACCTCATGGTCGTCCTGGTCGACGAGCGTCCCGAGGAGGTCACCGACTTCCAGCGGACCGTCTCGGGGGAGGTCATCGCCTCGACCTTCGACCGCCCGGCCGATGACCACACCCAGCTCGCCGAGCTGGCCATCGAGCGCGCCAAGCGGCTGGTGGAGCTCGGCCACGACGTCGTCATCCTGCTGGACGGGATCACCCGGCTGGGACGCGCCTACAACCTGGCGGCCCCGGCCTCGGGCCGGATCCTGTCCGGCGGCGTCGACTCGGCGGCCCTCTACCCGCCGAAGAGGTTCTTCGGCGCCGCCCGCAACATCGAGGACGGCGGGTCGCTCACCATTCTGGCCACCGCCCTGGTGGAGACCGGCTCCAAGATGGACGAGGTGATCTTCGAGGAGTTCAAGGGCACCGGCAACTCCGAGCTGCGGCTGCGCCGCGAGTTCGCCAACAAGCGGCTCTTCCCCGCTATCGACGTCGACGCCTCCGGTACCCGTCGCGAGGAGCTGCTGCTGTCCCGCGAGGAGACCGCGATCATGTGGAAGCTGCGTCGAGTGCTCTCGGGTCTGGACGGTTCCCAGGCCCTGGAGATGCTGCTGTCCAAGCTGCGCAAGACGCAGACCAACACGGAATTCCTGTTCACGATCGCCAAGACCACCCCCGGATCCGACTGA
Protein sequence:
MTQSTHGAASTGASQGTDLSARLLPELRAIGSQMGIKGARTMRKADLVAAIREGGFSPASAGSTAAPASAKAAVGHESGSAPSSADQASNDQAGSVEQASGVEQAPRRRRGREGGQRRSEDQSRPDQNTADQNRDDQSRDDQSRAERPRSDQRRSRDQNRPEQNRSEQGRSERHQDRQSQNGQNRGEERSRRRRANPQRTAQEDGPELSTSQVSDEVGARLDALSHHQGGHQDTAEHEHQESSVTSSGEDDYNGGRRSRRRRQRDRQNRRKRGGDHGGGDEPELSVREDDVLVPCSGILDIRDQYAFVRTSGYLPGPSDAYVAMNLVRKQGLRKGDVITGAMRAKREGERREKFAPLVRLDTVNGADPEQMRSRAEFSRLTPLYPQERLRLETDAKNMTGRIIDLVSPIGKGQRGLIVSPPKAGKTMIMQSIANSITQNNPEVHLMVVLVDERPEEVTDFQRTVSGEVIASTFDRPADDHTQLAELAIERAKRLVELGHDVVILLDGITRLGRAYNLAAPASGRILSGGVDSAALYPPKRFFGAARNIEDGGSLTILATALVETGSKMDEVIFEEFKGTGNSELRLRREFANKRLFPAIDVDASGTRREELLLSREETAIMWKLRRVLSGLDGSQALEMLLSKLRKTQTNTEFLFTIAKTTPGSD
GenBank Info
locus_tag - FAM19038-p1-1.1_002148
inference - COORDINATES: similar to AA sequence:RefSeq:WP_013069397.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - transcription termination factor Rho
protein_id - extdb:FAM19038-p1-1.1_002148
Gene Locus
Located on scaffold FAM19038-p1-1_scf1
FAM19038-p1-1.1_002147
