OpenGenomeBrowser
Tools
TAXID 1749
ORGANISM FAM19038
GENOME FAM19038-p1-1.1
GENE FAM19038-p1-1.1_002272
locus tag:
FAM19038-p1-1.1_002272
genome:
FAM19038-p1-1.1
species:
Acidipropionibacterium jensenii
taxid:
1749
Annotations
Type
Name
Description
Pathways
Ortholog
N0.HOG0002574 AAA family ATPase
Eggnog Ortholog
EO:COG0507
Eggnog Description
ED:A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Gene Product
AAA family ATPase
Sequences
Nucleotide sequence (GC-content: 67.6 %):
A T G A G A C G A C A C G C G G C A C A G G A A G C A G C A G C G C C G A C T T G G G C A G A C G C C G C T G A T C C G G G C C T C A C C C T C A C C C C T G A G T T C G T C T C C G G G C T C G A A C T G C T C G A C A G C G G C A G C A A C A T G T T T C T C A C C G G C A A G G C C G G C A C C G G C A A G T C G A C G C T G A T C C G G C T C T A T C T G G A G C A C A C C G A C C G G C G C A C G G T C A C C G T C G C C C C C A C C G G A A T C G C G G C G C T C A A C G T C G A C G G G T A C A C G A T C C A C C G G C T G T T C T C G T T C C C G A A G G A T G T C A G C G A G C A G G A T G T G C G T G G C A G C T C C T A C T A T C C G G G G C G G T T C G C G A A G A C G C T G G G C G A G C T C G A G A C A C T C A T C G T C G A C G A G G C C T C C A T G G T G C G C G C C G A C C T G T T C G A C G C C A T G G T C G C G G C G C T G G A G C G T T T C G G C C C G C A T C C G G G C G A G C C A T T C G G T G G T G T G C A G C T G G T C C T G G T G G G C G A T C T C T A C C A G C T G C C T C C G G T G G T G A C C G A T G C C G A G G G C G C T T T C A T C G A C G A G G A G T T C G G A A C G C C C T A C T T C T T C T C C G G G C A T T C C T T C A C C C G C G A G G C A T T T C C C A C G G T C G A G C T C A C C A C G G T G T T C C G T C A G A T C G G C G A C G A T C A G C T G G T C A G G C T G C T G A A C G G G G T G C G C G A G G G T G C G C T G C T T G A T G A C G C C C G T G C C C A G C T C A A C G C C C G G T C C G A C C C A G A C T T C G A A C C C G A T C C G G G T G A G T T C T G G C T G A C C T T G G C A A C C A C G A A C C G C A T C G T G G G T G C G C G C A A T C G C A G G A T G C T G G A A C T G C T G G G T G G C G A G A C G A G G A C A T T C A A C G C G A C G G T G A C C G G T G A G A C C G A C G G C T T C G A G C A T C C T G C C G A G G A C G T C C T G A A G C T G G C G G T C G G C G C C C A G G T C A T G C T G C T G A A C A A C G A A C C C G C C G G C C G G T G G G T C A A C G G C A G C A T C G G C C G C A T C G A G A G C A T T C G G A A G G A C C A G T C C G G A C C G G T C G T C G A G G T G C G G C T G C G C G A C G G C G A C C T G G T G G A G G T G C G C C G G C A C G T C T G G G A C A T C A C C C G G C C G G T G G T G C A C G G C G A C C G C C T G G T G C A C C A G A T C G T C G G C A C C T T C G A G C A G C T G C C G A T G A A G C T G G C C T G G G C G A T C A C C A T T C A C A A G A G C C A G G G C C A G A C T C T C G A T C A C G T G G T C G T C G A C C T C A C C G G A G G G A C A T T C G C C A A C G G T C A G C T C T A T G T T G C G C T C A G C C G G T G C A C C A G T C T G G A T G G G C T C G T G C T G A A G C G T C C G G T G C T G C C G A A G G A C C T G A A G A C C G A C G T G C G G G T G C G C C G G T T T C T C A A T G C C G C A T C C G A T G C A G A T G A C G T G C A T G G T C G G G G T A G G G C C T A T G T C G C G G C C C T G T T C G T C G G C A C C G A G G G C G A C C G A T A T C G G C C C C G C C C G G T G G A G A T C G C C G T G G C C A C C G C A G G C G G C G A C G G C G A G G A G G C G A C G A C C G T C G T C A A C C C G A C G A T G G A T C T C T A C T C C G C C A A G A C C G A G T A C G G C A T C A C C A C G C G G G A C G T G C A G C T G G C C C C C C T G C T C A C C G A G G C C T G G G C G G C A C T G T C G C C G C T G C T C G C C G G G C G G A C C C C G G T G G G G G T C G A C A T C G A T C G C A C T C T C G G G C T G A T C G A C T C G G A G C T C A A G C G C A A C G G C A T C G T G C A G A A G A T G C C G C T C G G T G C G G A G C T G C C C G C A G A T G C C C T C G C G G G T C C T G C T C G C G G C G G C G C G G A T G G C T G C G C C G G G G C G A C A G C G C T G A C A C T G G C C C G C C G G A T G C G G G A C G C G G G G G A G C G T C T G C T G C A G G A G C A T C C C G A T G C G C T C G C A G C G G C T G G T G T C T C G G C C T T T C C G G T C C C T G C C T G G G G G A G C G G C T A T C T G C T C G C C C G C A C G A C C G G T G C C G G C G G A T G C C G G G A C G C G A C G G G A T T C A C G G T G G G G G G C A A C C T C T C G G C G C A G G A C G A T C C G G C C C A G G T G C T G G C G G A T G C T C T G G C C G G C G C G T G G A C G C G C G T C G T C G A C C G G G A C G C C G A G G T C G T C T C A C G A C T G C G T G A C G C C G A A C G C C A C T T C G G C G T G C A G A T T C T T C C C G A C G G G T T C G A G G C G A C C G G C C C G T T G G A G G C A C G G G C G G T G C T T G T G C C G G G T G C C A G G G T C T G C T T C A C C G G C G A G G T G G T C T C G C A A C G C T A C G G G G C G T T C G A T C G T G G T G A G A T G C A G C A G C T G G C G C T C G A T C G T G G A C T T G C C A T C T C G G A G A A C A T G A C G A A G A C C A A G A C C G A T G T G C T G G T G G T C G C C C A G C G C G G C A C G C A G T C G G G T A A G G C G A A A A A G G C G G C T C A G T G G G G C A A A C C G G T G C T T C C G G C A G A T G C G T T T C T T G A G T G G G C T C G A G G G C A G T G A
Protein sequence:
M R R H A A Q E A A A P T W A D A A D P G L T L T P E F V S G L E L L D S G S N M F L T G K A G T G K S T L I R L Y L E H T D R R T V T V A P T G I A A L N V D G Y T I H R L F S F P K D V S E Q D V R G S S Y Y P G R F A K T L G E L E T L I V D E A S M V R A D L F D A M V A A L E R F G P H P G E P F G G V Q L V L V G D L Y Q L P P V V T D A E G A F I D E E F G T P Y F F S G H S F T R E A F P T V E L T T V F R Q I G D D Q L V R L L N G V R E G A L L D D A R A Q L N A R S D P D F E P D P G E F W L T L A T T N R I V G A R N R R M L E L L G G E T R T F N A T V T G E T D G F E H P A E D V L K L A V G A Q V M L L N N E P A G R W V N G S I G R I E S I R K D Q S G P V V E V R L R D G D L V E V R R H V W D I T R P V V H G D R L V H Q I V G T F E Q L P M K L A W A I T I H K S Q G Q T L D H V V V D L T G G T F A N G Q L Y V A L S R C T S L D G L V L K R P V L P K D L K T D V R V R R F L N A A S D A D D V H G R G R A Y V A A L F V G T E G D R Y R P R P V E I A V A T A G G D G E E A T T V V N P T M D L Y S A K T E Y G I T T R D V Q L A P L L T E A W A A L S P L L A G R T P V G V D I D R T L G L I D S E L K R N G I V Q K M P L G A E L P A D A L A G P A R G G A D G C A G A T A L T L A R R M R D A G E R L L Q E H P D A L A A A G V S A F P V P A W G S G Y L L A R T T G A G G C R D A T G F T V G G N L S A Q D D P A Q V L A D A L A G A W T R V V D R D A E V V S R L R D A E R H F G V Q I L P D G F E A T G P L E A R A V L V P G A R V C F T G E V V S Q R Y G A F D R G E M Q Q L A L D R G L A I S E N M T K T K T D V L V V A Q R G T Q S G K A K K A A Q W G K P V L P A D A F L E W A R G Q
GenBank Info
locus_tag - FAM19038-p1-1.1_002272
Gene Locus
Located on scaffold FAM19038-p1-1_scf1
FAM19038-p1-1.1_002271
