FAM19038-p1-1.1_002365 - OpenGenomeBrowser

locus tag: FAM19038-p1-1.1_002365 genome: FAM19038-p1-1.1
species: Acidipropionibacterium jensenii taxid: 1749

Annotations

Type	Name	Description	Pathways
Gene Product	tryptophan synthase subunit alpha
KEGG reaction	R02722	L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]; L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O	kornec00260kornec00400kornec01100kornec01110kornec01230
KEGG reaction	R02340	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase; Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate	kornec00400kornec00402kornec01100kornec01110
KEGG reaction	R00674	L-serine hydro-lyase (adding indole; L-tryptophan-forming); L-Serine + Indole <=> L-Tryptophan + H2O	kornec00400kornec01100kornec01110
Ortholog	N0.HOG0001726	tryptophan synthase subunit alpha
KEGG gene	K01695	trpA; tryptophan synthase alpha chain [EC:4.2.1.20]	kornec00260kornec00400kornec01100kornec01110kornec01230
Gene Ontology	GO:0071944	cell periphery
Gene Ontology	GO:0044464	obsolete cell part
Gene Ontology	GO:0040007	growth
Gene Ontology	GO:0016020	membrane
Gene Ontology	GO:0008150	biological_process
Gene Ontology	GO:0005886	plasma membrane
Gene Ontology	GO:0005623	obsolete cell
Gene Ontology	GO:0005575	cellular_component
Eggnog Protein	EP:trpA
Eggnog Ortholog	EO:COG0159
Eggnog Description	ED:The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
EC Number	EC:4.2.1.20	tryptophan synthase; L-tryptophan synthetase; indoleglycerol phosphate aldolase; tryptophan desmolase; tryptophan synthetase; L-serine hydro-lyase (adding indoleglycerol-phosphate); L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate, L-tryptophan and glyceraldehyde-3-phosphate-forming]	kornec00260kornec00400kornec01100kornec01110

Occurs in the following pathway maps:

Pathway	Description
kornec00260	Glycine, serine and threonine metabolism
kornec00400	Phenylalanine, tyrosine and tryptophan biosynthesis
kornec00402	Benzoxazinoid biosynthesis
kornec01100	Metabolic pathways
kornec01110	Biosynthesis of secondary metabolites
kornec01230	Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 72.3 %):

GTGAGCAGCAGCGGCGAGGCCTACCGGGTCGCACGAGCCGAGAACCGGGCCGCCCTGGTCGGCTACCTGCCGGTCGGCCATCCCAGCGTCGCCGACTCCCTGAAGGCGATGAAGGCGCTCACCGAGGGGACCACCGGCGTCGGTGTGGACCTCGTCGAGATCGGTCTGCCCTACTCCGACCCGATGATGGACGGCACCGTCATCCAGCACGCCACCACCGCGGCGCTGAGCCGCGGGGTGCACACCCGCGACGCCCTGCGCGCCGCCGAGACGGTCTCGGCCACCGGGACCCACTGCGTCGTGATGACCTACTGGAACCTCATCGAGCACTACGGTGTCGACGCCTTCGCCCGGGATCTCGCCTCCGCCGGCGGATCGGGCCTCATCACCCCCGATCTGACCCCCGACGAGGCCGACCAGTGGTTCGAGGCCTCCGACGCCCACGGCCTGGACCGGATCTTCCTGGTGGCCCCCTCGTCCACCGAGGAGAGGCTCGCCCGGACCGTCCACGCCTGTCGCGGCTGGGTCTACGCCACCAGCGTGATGGGGGTCACCGGCGCCCGCAACCAGACCTCCACCGCCGCCCCCGAGCTGGTCGCCCGGGTCAAGGCCGTCGATCCCGACATCCCGGTCGGGGTCGGGCTGGGGGTCTCCAACGGCGACCAGGCCGCCGAGATCGGATCCTTCGCCGACGGCGTCATCGTGGGTTCGGCCCTGGTGCGCACCCTGGTGGAGGCCGACGAGTCCGGGGAGGGGGCCGACGCCGGCATCGAGCGGATGCGGCTCATCGTCGACGATCTGGTGGCCGGTGTGCGTCGCGCCCGGGTCACCGAGGGAGCACGGTGA

Protein sequence:

MSSSGEAYRVARAENRAALVGYLPVGHPSVADSLKAMKALTEGTTGVGVDLVEIGLPYSDPMMDGTVIQHATTAALSRGVHTRDALRAAETVSATGTHCVVMTYWNLIEHYGVDAFARDLASAGGSGLITPDLTPDEADQWFEASDAHGLDRIFLVAPSSTEERLARTVHACRGWVYATSVMGVTGARNQTSTAAPELVARVKAVDPDIPVGVGLGVSNGDQAAEIGSFADGVIVGSALVRTLVEADESGEGADAGIERMRLIVDDLVAGVRRARVTEGAR

GenBank Info

locus_tag - FAM19038-p1-1.1_002365
EC_number - 4.2.1.20
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004811361.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - tryptophan synthase subunit alpha
protein_id - extdb:FAM19038-p1-1.1_002365

Gene Locus

Located on scaffold FAM19038-p1-1_scf1

Cellular location

Responsible annotations:
SL-0039: GO:0005886 plasma membrane
SL-0162: GO:0016020 membrane