update range to 10000 bp
locus tag: FAM19038-p1-1.1_002366 genome: FAM19038-p1-1.1
species: Acidipropionibacterium jensenii taxid: 1749

Annotations

Type Name Description Pathways
Gene Product
 tryptophan synthase subunit beta
Gene Code
 trpB
KEGG reaction
 R02722 L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]; L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O kornec00260kornec00400kornec01100kornec01110kornec01230
KEGG reaction
 R02340 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase; Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate kornec00400kornec00402kornec01100kornec01110
KEGG reaction
 R00674 L-serine hydro-lyase (adding indole; L-tryptophan-forming); L-Serine + Indole <=> L-Tryptophan + H2O kornec00400kornec01100kornec01110
Ortholog
 N0.HOG0001701 tryptophan synthase subunit beta
KEGG gene
 K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] kornec00260kornec00400kornec01100kornec01110kornec01230
Gene Ontology
 GO:1901607 alpha-amino acid biosynthetic process
Gene Ontology
 GO:1901605 alpha-amino acid metabolic process
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0046394 carboxylic acid biosynthetic process
Gene Ontology
 GO:0046219 indolalkylamine biosynthetic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044283 small molecule biosynthetic process
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044106 cellular amine metabolic process
Gene Ontology
 GO:0043436 oxoacid metabolic process
Gene Ontology
 GO:0042435 indole-containing compound biosynthetic process
Gene Ontology
 GO:0042430 indole-containing compound metabolic process
Gene Ontology
 GO:0042401 cellular biogenic amine biosynthetic process
Gene Ontology
 GO:0040007 growth
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019752 carboxylic acid metabolic process
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0016836 hydro-lyase activity
Gene Ontology
 GO:0016835 carbon-oxygen lyase activity
Gene Ontology
 GO:0016829 lyase activity
Gene Ontology
 GO:0016053 organic acid biosynthetic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009309 amine biosynthetic process
Gene Ontology
 GO:0009308 amine metabolic process
Gene Ontology
 GO:0009073 aromatic amino acid family biosynthetic process
Gene Ontology
 GO:0009072 aromatic amino acid family metabolic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008652 cellular amino acid biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006586 indolalkylamine metabolic process
Gene Ontology
 GO:0006576 cellular biogenic amine metabolic process
Gene Ontology
 GO:0006568 tryptophan metabolic process
Gene Ontology
 GO:0006520 cellular amino acid metabolic process
Gene Ontology
 GO:0006082 organic acid metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004834 tryptophan synthase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0000162 tryptophan biosynthetic process
Eggnog Protein
 EP:trpB
Eggnog Ortholog
 EO:COG0133
Eggnog Description
 ED:The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
EC Number
 EC:4.2.1.20 tryptophan synthase; L-tryptophan synthetase; indoleglycerol phosphate aldolase; tryptophan desmolase; tryptophan synthetase; L-serine hydro-lyase (adding indoleglycerol-phosphate); L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate, L-tryptophan and glyceraldehyde-3-phosphate-forming] kornec00260kornec00400kornec01100kornec01110

Occurs in the following pathway maps:

Pathway Description
kornec00260 Glycine, serine and threonine metabolism
kornec00400 Phenylalanine, tyrosine and tryptophan biosynthesis
kornec00402 Benzoxazinoid biosynthesis
kornec01100 Metabolic pathways
kornec01110 Biosynthesis of secondary metabolites
kornec01230 Biosynthesis of amino acids

Sequences

Nucleotide sequence (GC-content: 69.5 %):

ATGTCACCTTCCAGCACATCTCCTGCACCCCGAACCCCGGACACCGGGGCACCGGCCCAGGTGCCCGACGCCACCGGCCACTTCGGCAGATTCGGCGGCCGGTTCGTCCCCGAGGCCCTGCAGGCCGCCCTGGACCAGCTCGACCGCACCTTCGAGGAGGCGATGGCCGATCCGGCCTTCGCCACCGCCCTGGACGACCTGCGTCGCAACTACGCCGGACGGCCCAGCCCTCTCACCGAGGCCCACCGGTTCGCCGAGCACTGCCACGGGGCCCGGGTCTTCCTCAAGCGCGAGGACCTCAACCACACCGGTTCGCACAAGATCAACAACGTCCTGGGGCAGGCTCTGCTGGCCCGCCGGATGGGCAAGCACCGTCTGATCGCCGAGACCGGTGCCGGCCAGCACGGCGTCGCCACCGCCACCGTCGCGGCGATGCTCGGGATGAAGTGCCGGGTCTACATGGGCAAGGTCGACACCGACCGGCAGGCCCTCAACGTCGCCCGGATGCAGCTGCTGGGCGCCGAGGTGGTGGCCGTGGAGGCCGGCTCCAAGACCCTCAAGGACGCCATGAACGAGGCCATGAGGGACTGGGTGGCCCATGTCGACGACACCCACTACCTGATCGGCACCGCCTCGGGCCCGGCCCCCTTTCCCAAGGTTGTCAAGCAGTTCCAGCGGGTCATCTCGATCGAGTCCCGCGAGCAGATCGAGATGATCACCGGCTGCCTGCCCGACGCCATCTGCGCCTGCGTCGGTGGCGGCTCCAACGCCATCGGCTCCTTCGCCGAGTACATCGCCGACCCCTCGGTCAAGCTGTTCGGCTTCGAGGCGGGCGGCGAGGGAGTGGCCACCGGCCACCACGCCGCCTCCATCACCGGGGGATCGGTGGGGGTGCTGCACGGCACCCGGACCTACATCCTTCAGGACGAGGACGGCCAGACCGTCGAGTCCCACTCCATCTCGGCCGGCCTGGACTACCCGGGGGTGGGCCCCGAGCACTCCTGGCTGGCCCGCACCGGCCGGGCCCAGTACCTGCCCATCGACGACGACGAGGCGATGGAGGCGCTGCGCATCCTCACCGAGTCCGAGGGGATCATGCCCGCCATCGAGTCGGCCCACGCGGTCGCCGGGGCGATGAAGATCAGCAAGGACCTGGCGGGCAGGAACGGCAATCCGCCGGTCATCATCATCACCATCTCCGGGCGCGGGGACAAGGACGTCGACACGGCGTTGAAGTGGTTCGGCATCGACGGCAGCGTCGACGCCACGACAGGAGGCATGAAGTGA

Protein sequence:

MSPSSTSPAPRTPDTGAPAQVPDATGHFGRFGGRFVPEALQAALDQLDRTFEEAMADPAFATALDDLRRNYAGRPSPLTEAHRFAEHCHGARVFLKREDLNHTGSHKINNVLGQALLARRMGKHRLIAETGAGQHGVATATVAAMLGMKCRVYMGKVDTDRQALNVARMQLLGAEVVAVEAGSKTLKDAMNEAMRDWVAHVDDTHYLIGTASGPAPFPKVVKQFQRVISIESREQIEMITGCLPDAICACVGGGSNAIGSFAEYIADPSVKLFGFEAGGEGVATGHHAASITGGSVGVLHGTRTYILQDEDGQTVESHSISAGLDYPGVGPEHSWLARTGRAQYLPIDDDEAMEALRILTESEGIMPAIESAHAVAGAMKISKDLAGRNGNPPVIIITISGRGDKDVDTALKWFGIDGSVDATTGGMK

GenBank Info

gene - trpB
locus_tag - FAM19038-p1-1.1_002366
EC_number - 4.2.1.20
inference - COORDINATES: similar to AA sequence:RefSeq:WP_014741402.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - tryptophan synthase subunit beta
protein_id - extdb:FAM19038-p1-1.1_002366

Gene Locus

Located on scaffold FAM19038-p1-1_scf1

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
FAM19038-p1-1.1_002365
FAM19038-p1-1.1_002367