update range to 10000 bp
locus tag: FAM19038-p1-1.1_002503 genome: FAM19038-p1-1.1
species: Acidipropionibacterium jensenii taxid: 1749

Annotations

Type Name Description Pathways
Gene Product
 sigma-70 family RNA polymerase sigma factor
Ortholog
 N0.HOG0002142 sigma-70 family RNA polymerase sigma factor
KEGG gene
 K03093 sigI; RNA polymerase sigma factor
KEGG gene
 K03087 rpoS; RNA polymerase nonessential primary-like sigma factor kornec02026kornec05111
KEGG gene
 K03086 rpoD; RNA polymerase primary sigma factor kornec02040
Eggnog Ortholog
 EO:COG0568
Eggnog Description
 ED:sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released

Occurs in the following pathway maps:

Pathway Description
kornec02026 Biofilm formation - Escherichia coli
kornec02040 Flagellar assembly
kornec05111 Biofilm formation - Vibrio cholerae

Sequences

Nucleotide sequence (GC-content: 71.1 %):

ATGAACTTCGCAGAATTCATCAGTCGTGCCGGATCGGGTCGTCTCACGGCGGGCCAGCAGCACCGCCTGTTCCTCATGATGGAGGCCGGCCTGGTGGCTCAAGCCGTGAGGCACGGCGACCTGGTCGTGGCCACCGATGCGACCACCGGGGAGCTGGACAGACTCATCGAGGAGGGCCGGCGGGCCCACGAACGGCTGTGGCAGTCCAATCTCCCCCTGGCCATGAGAATCGCCGGGGAGACCGGCCGCTCCCGGGCGGTGGCCTCGGAGGATCTCATCCAGGCCGCCTGCGTCGGGCTGGCGGAGGCCCTGATGCGCTTCGATCCGCGCCGGGGGCTGAAGTTCTCCACCTACGCGTGGCCCGCGATCCGGCGTCGGGTCGCCGAGGAGCTGATGGGAGGAGACTCGTCGCGACCGGTCTGGCGCAGGCGGACCGAGTGCGCGGTCGACCGCCGGGAGATGACCCTCACGATGGAGCTGGGCCGGCCGCCCGGGGACGCCGACATCGCCACCGACCTGGGAGTCGATGTCGCCTGGGTCCGAGATCGTCGGGGACGCCGTGGCGATGTCCCGATCGGTGAGGCATGGCTGCTGGAGCAGCTGATGCCCCGCGGCGACGCCGCCGAACCGGACGAGCACTGGCTGACCGAGGCCCGTCGGCAGCTGCCGCAGCTGCAGCGACGCATCATCGATGCCCACTTCGGCCTCGGGGGCCGGGCAGTGCCACGCCACAGGCTGGCGGCCGAGCTGGGGATCAGCGACCGGGCGGTGCGTCGGATGGAGCTGCGCGCACTGGAGCTGATGCGCGATCTGGCGGCCCGTCACAGGGAGGAGTCGTGA

Protein sequence:

MNFAEFISRAGSGRLTAGQQHRLFLMMEAGLVAQAVRHGDLVVATDATTGELDRLIEEGRRAHERLWQSNLPLAMRIAGETGRSRAVASEDLIQAACVGLAEALMRFDPRRGLKFSTYAWPAIRRRVAEELMGGDSSRPVWRRRTECAVDRREMTLTMELGRPPGDADIATDLGVDVAWVRDRRGRRGDVPIGEAWLLEQLMPRGDAAEPDEHWLTEARRQLPQLQRRIIDAHFGLGGRAVPRHRLAAELGISDRAVRRMELRALELMRDLAARHREES

GenBank Info

locus_tag - FAM19038-p1-1.1_002503
inference - COORDINATES: protein motif:HMM:TIGR02937.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - sigma-70 family RNA polymerase sigma factor
protein_id - extdb:FAM19038-p1-1.1_002503

Gene Locus

Located on scaffold FAM19038-p1-1_scf1

FAM19038-p1-1.1_002502
FAM19038-p1-1.1_002504