update range to 10000 bp
locus tag: FAM19471-i1-1.1_000187 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 ribonuclease J
Ortholog
 N0.HOG0001264 ribonuclease J
KEGG gene
 K12574 rnj; ribonuclease J [EC:3.1.-.-] kornec03018
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
Gene Ontology
 GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
Gene Ontology
 GO:0090501 RNA phosphodiester bond hydrolysis
Gene Ontology
 GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044085 cellular component biogenesis
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042802 identical protein binding
Gene Ontology
 GO:0042254 ribosome biogenesis
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
 GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters
Gene Ontology
 GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
Gene Ontology
 GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016072 rRNA metabolic process
Gene Ontology
 GO:0016071 mRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008409 5'-3' exonuclease activity
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006397 mRNA processing
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006364 rRNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005515 protein binding
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0004540 ribonuclease activity
Gene Ontology
 GO:0004534 5'-3' exoribonuclease activity
Gene Ontology
 GO:0004532 exoribonuclease activity
Gene Ontology
 GO:0004527 exonuclease activity
Gene Ontology
 GO:0004521 endoribonuclease activity
Gene Ontology
 GO:0004519 endonuclease activity
Gene Ontology
 GO:0004518 nuclease activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rnjA
Eggnog Ortholog
 EO:COG0595
Eggnog Description
 ED:An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay

Occurs in the following pathway maps:

Pathway Description
kornec03018 RNA degradation

Sequences

Nucleotide sequence (GC-content: 53.2 %):

ATGCGTAAGTTACAAATTAAGAATAATGAAGTGGCCTTCTTTGCTGTCGGGGGCCTGGGGGAAATTGGGAAGAACATGTACTGTGTTCAGTTCCAAGATGAAATTGTGATCATTGACTGTGGGGTACTCTTCCCAGAAGACGAACTACTTGGGGTCAATTACGTCATTCAAAATTACGATTACCTAGTTGAAAATAAGGAAAAGATTAAAGGGATTTTCATTACCCACGGTCACGAAGACCACATTGGAGGCTTGCCCTTCTTCTTGCAAAAGGTTAACGTGCCGATCTATGCCGGTCCGTTTGCCACCTCGTTGATTAAGGGGAAGTTAGACGAAAAGCACCTCTTGCGGAGCACGGAACTGCACGAGATTGATGAATTCTCCGAGGTTCACTTTAAGAAGCTGTGGGTTTCCTTCTTCCGGACTACCCACTCGATTCCGGATACGGTGGGGGTAGCGGTTCACACCCCGCAAGGGACGATCATTCAAACCGGGGACTTCAAGTTTGATTTAACCCCGGTTGGCAACTTGCCGGCGCCCAACTTCCAACAAATGGCCAAGCTGGGTGAAGAAGGGGTGCTCTTGTTGACCTCGGACTCCACCAACGCCGAACGGCCGGAGTTCACTAAGTCCGAACGCTGGGTTGACATCCATATTCGGCGGGTCTTCGAACGAATTAAGGGGCGGATCATCTTTGCCTCCTTTGCCTCCAACGTTTACCGGTTGCGGGAAGCCTCTGACGCCGCCATGCGCCAGGGCCGCAAGATCGCCATTTTTGGTCGGTCAATGGAAAACGCCATTGCGGCGGGTCAGGCACTGGGTTACCTAAAGATCCCGGAAGACTCCTTGATCGACCCCAACGAGTTAAACTCCTACCCACCGGAAAAGGTCATGATCATGTGTACTGGTTCGCAGGGGGAACCGATGGCCGCCCTGTCACGGATCGCTAACGGGACCCACCGTCAGATCACGATCCAACCTGAAGATACGGTGGTCTTCTCCTCCAACCCAATTCCGGGGAACACGACTTCGGTCAACGCCCTGATTAACAAGTTGGAAGAAAGCGGCGCTACCGTTATCCATGGTTACGTTAACAACATCCACACGTCCGGGCACGGGGGCCAAATTGACGAAGAACTAATGCTGCGCTTGATGAAGCCGAAGTTCTTCGCCCCGGTCCACGGTGAATACCGGATGCAAAAGATCCACACTAAGCTGGCCCAATTGACCGGGGTGCCAAAGGAAAACACCTTCATCCTGGAAAACGGGGACGTTCTGGCCTTGACCAAGGACACCTGTCGCTTAGCCGACCACATCGAATCGATGGGGGACGTTTACATTGACGGACGCGACGTCAGCGATTCAGTTGGTGATCCGGAAATTCGCGAACGGCGGATGCTCTCCGAAGAAGGGGTTGTAACGGCAGTGGCCGTGGTCGACTTAAAGGACTACCAGATCGTGGCGGGGCCAGATATTGTTTCCCGGGGCTTTGTTTACATGCACGAATCCCAGGAACTGATCAAGGCGGCCAATCACGAAGTCTTCTGGGCGATCCTAAACACCTTCAAGAACCACAAGCGGGTTGATCGCCGGGCCATTAACCGGATGATCGTCTTACGTTTGCAACGGCTCTTGTACGACCGGACCGGCCGGCGCCCAGTCATTATTCCGATGGTGACGATCCTAAACGCCGATGCTCAGGAACGGGCACCAAAGAAAAACCAAGCCGAAGATGGTAAGGAAGGATCCGGGGCAACCCGGCGTAACAACCGTAAGTGTCGTCCGAACGCCAAGAAAACGGCTGCGAAGGAAACGGCTACGGTCACCGAATAG

Protein sequence:

MRKLQIKNNEVAFFAVGGLGEIGKNMYCVQFQDEIVIIDCGVLFPEDELLGVNYVIQNYDYLVENKEKIKGIFITHGHEDHIGGLPFFLQKVNVPIYAGPFATSLIKGKLDEKHLLRSTELHEIDEFSEVHFKKLWVSFFRTTHSIPDTVGVAVHTPQGTIIQTGDFKFDLTPVGNLPAPNFQQMAKLGEEGVLLLTSDSTNAERPEFTKSERWVDIHIRRVFERIKGRIIFASFASNVYRLREASDAAMRQGRKIAIFGRSMENAIAAGQALGYLKIPEDSLIDPNELNSYPPEKVMIMCTGSQGEPMAALSRIANGTHRQITIQPEDTVVFSSNPIPGNTTSVNALINKLEESGATVIHGYVNNIHTSGHGGQIDEELMLRLMKPKFFAPVHGEYRMQKIHTKLAQLTGVPKENTFILENGDVLALTKDTCRLADHIESMGDVYIDGRDVSDSVGDPEIRERRMLSEEGVVTAVAVVDLKDYQIVAGPDIVSRGFVYMHESQELIKAANHEVFWAILNTFKNHKRVDRRAINRMIVLRLQRLLYDRTGRRPVIIPMVTILNADAQERAPKKNQAEDGKEGSGATRRNNRKCRPNAKKTAAKETATVTE

GenBank Info

locus_tag - FAM19471-i1-1.1_000187
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004562921.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease J
protein_id - extdb:FAM19471-i1-1.1_000187

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

FAM19471-i1-1.1_000186
FAM19471-i1-1.1_000188