update range to 10000 bp
locus tag: FAM19471-i1-1.1_000217 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0000192 ATP-dependent Clp protease ATP-binding subunit
KEGG gene
 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
Gene Ontology
 GO:1990170 stress response to cadmium ion
Gene Ontology
 GO:1990169 stress response to copper ion
Gene Ontology
 GO:0097501 stress response to metal ion
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046688 response to copper ion
Gene Ontology
 GO:0046686 response to cadmium ion
Gene Ontology
 GO:0042221 response to chemical
Gene Ontology
 GO:0010038 response to metal ion
Gene Ontology
 GO:0010035 response to inorganic substance
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006950 response to stress
Eggnog Protein
 EP:clpC
Eggnog Ortholog
 EO:COG0542
Eggnog Description
 ED:Part of a stress-induced multi-chaperone system
Gene Product
 ATP-dependent Clp protease ATP-binding subunit

Sequences

Nucleotide sequence (GC-content: 54.3 %):

ATGGATAACGAAAATCTATACACACCAAGCGCCAATAACGTCTTGCGGATTGCCCAGGAACAGGCGCGCTTTTTTAAACACCAAGCCGTCGGGACGGAACACCTCCTCTTGGCCTTGAGCCTCGAAAAGGTGGGGGTGGCTGCGACGGTTTTGCACCAGTTTAACGTCACTAGTGACGACCTGCGTGAAGAGATTGAACGCTACACCGGGTACGGAACCATGCAAAACACCGCTAGCGATGCGTACCTGCCTAATTCGCCAAAGTTACGCGAAATTTTGGCCCTGGCGGCCCGCTTGGCCCAACAAATGGGGGCAAGACGTGTGGGTACTGAGCACCTATTGTTGGCCCTGTTGTCAGATGAGACCATCCTTTCCTCGCGGATCCTTTTGAACTTGGACGTGGAACCAAAGCAAGCCCGCCGGATGTTGTTACGGCGTTTGGGGGTTTCTCAAGAGGGACGGCGCAACCGCCGGCAAAACCAATCCAATACCCAACCGGAGGAGGGGGAAGGGACTACGCCAACCCTTGATAAGTACGGCCGTGATTTGACAAAGGTGGCCAGGGAAGAAGGGCTTGACCCCGTAATTGGACGGGAAAAAGAAATCAAGCGGGCGATTCAGATCCTCGCCCGGCGGGCCAAGAATAACCCGGTCCTGTTAGGGGAACCGGGGGTCGGAAAGACGGCGATTGTCGAGGGCCTTGCCCAACGGATAGTTAACGGTGAAGTTCCTGATGAACTAGCCGAAAAGCGCTTGGTGGTCCTGGATATGGGGACCTTGGTTGCCGGTACCAAATTCAGGGGTGAATTCGAGGGGCGGATCAAAAACGTCATCGATGAAGTTTACCGGGACGGCAAAATTATCTTATTTATCGACGAAATCCACACCATGATTGGTGCCGGGGGAGCAGAGGGGGCGATTGACGCCTCCAACATTCTCAAACCGGCCCTGGCCCGGGGGGAACTCCAGCTGATTGGGGCGACTACCCTGGACGAGTACCAAAAGTACGTTGAAACCGATGCGGCCTTAGAACGGCGTTTTGCGACGATCATGGTTGAAGAGCCAACTAAGGAGCAGACCCGCCAAATCCTCGAGGGAATTCGGCCCCGCTATGAAAAACACCACCACGCCAAGATTACTGATGAAGCGCTGATGGCGGCGGTTAACTTGTCGAGTCGTTACATTACCAACCGTTTCTTACCGGATAAGGCGATTGACCTGATCGATGAGGCCGGGGCAATGGTCCGCATCGATGGTGAAGAAAAGGGGAACCAAAAGAATGGCTTGACGGTCAAGTTAGAGGAACTCCGGGCACAAAAAGAGGACGCAATTGCCGAGCAAGACTTTGACCGGGCGGCCGACTTACGCCACGAAGAGCTAACGGTTAAGCGACAAATCGAAGAACAGCGGGAACGAGACGCCCAGTTGGTTGCCGATGGCAAGTTCCTGTACACCGTGACGGCTGAAGACATTGCCAAGGTAGTTAACGAATGGACCGGGGTGCCGTTAACCCAACTCCAAAAGAAGGAAAGCGATCGCTTGGTTAACCTGGAGAGGGTGCTTCACAAACGAGTGATCGGCCAAGACGAAGCCGTTTCGGCGATTGCCCGGGCAATTCGCCGGGCCCGCAGCGGCTTAAAGGACCCAAACCGGCCGATTGGTTCCTTCATGTTCTTAGGACCAACCGGGGTTGGGAAGACCGAGCTGGCTAAGGCGTTAGCCGAAGCGATGTTTGGCCAAGAAGACAACATGATCCGGATTGATATGTCCGAGTACATGGAACGCTATTCGACCAGCCGGTTAGTCGGGGCGGCGCCAGGTTACGTCGGCTACGACGAAGGTGGACAGTTGACCGAACAGGTTCGCCAACACCCGTACTCCGTCGTCTTATTAGATGAGGTGGAAAAGGCCCACCCAGATGTCTTTAACCTCCTGTTACAGGTCTTAGATGATGGGGTTTTGACCGATTCCAAGGGACGTAAGGTTGACTTCCGGAACACGATTTTGATAATGACCTCCAACTTGGGGGCGACCCAGTTGGCCGATGAAAAGACGGTCGGCTTCGGGGCGACTGGCGTTCAAAATAATTACCAAGCGATGTCGGCGGCCATCAAGCAACAGATGCGCTTGCACTTCCGGCCGGAGTTCTTGAACCGGATTGATGAGACCGTGATCTTCCACTCGTTGACCAAGGAAAATATTCACCAAGTGGTTAAGCTCTTGAGCGCCCAGTTGGTAAAGCGGGTGGCGGAACAAAAGATCAGCCTGAAACTGACCCCGGCTGCCATTGAGTTAGTAGCGGCGAAGGGGTACAACCCTGAATACGGGGCGCGGCCATTACGGCGGGCCTTACAAACGATGGTGGAAGACCCGCTCTCCTTATCGATGATTGATGGCCAAGTTGCGGCCGGTGATCAAGTGACGATTGGTGCCCAACGGGGGAAATTGAGCTTCAAAGTCAAAACTTCTGACAACGCTTCCCGGAACCTAGTTCTCCAAAATTAA

Protein sequence:

MDNENLYTPSANNVLRIAQEQARFFKHQAVGTEHLLLALSLEKVGVAATVLHQFNVTSDDLREEIERYTGYGTMQNTASDAYLPNSPKLREILALAARLAQQMGARRVGTEHLLLALLSDETILSSRILLNLDVEPKQARRMLLRRLGVSQEGRRNRRQNQSNTQPEEGEGTTPTLDKYGRDLTKVAREEGLDPVIGREKEIKRAIQILARRAKNNPVLLGEPGVGKTAIVEGLAQRIVNGEVPDELAEKRLVVLDMGTLVAGTKFRGEFEGRIKNVIDEVYRDGKIILFIDEIHTMIGAGGAEGAIDASNILKPALARGELQLIGATTLDEYQKYVETDAALERRFATIMVEEPTKEQTRQILEGIRPRYEKHHHAKITDEALMAAVNLSSRYITNRFLPDKAIDLIDEAGAMVRIDGEEKGNQKNGLTVKLEELRAQKEDAIAEQDFDRAADLRHEELTVKRQIEEQRERDAQLVADGKFLYTVTAEDIAKVVNEWTGVPLTQLQKKESDRLVNLERVLHKRVIGQDEAVSAIARAIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAEAMFGQEDNMIRIDMSEYMERYSTSRLVGAAPGYVGYDEGGQLTEQVRQHPYSVVLLDEVEKAHPDVFNLLLQVLDDGVLTDSKGRKVDFRNTILIMTSNLGATQLADEKTVGFGATGVQNNYQAMSAAIKQQMRLHFRPEFLNRIDETVIFHSLTKENIHQVVKLLSAQLVKRVAEQKISLKLTPAAIELVAAKGYNPEYGARPLRRALQTMVEDPLSLSMIDGQVAAGDQVTIGAQRGKLSFKVKTSDNASRNLVLQN

GenBank Info

locus_tag - FAM19471-i1-1.1_000217
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004562953.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ATP-dependent Clp protease ATP-binding subunit
protein_id - extdb:FAM19471-i1-1.1_000217

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

FAM19471-i1-1.1_000216
FAM19471-i1-1.1_000218