update range to 10000 bp
locus tag: FAM19471-i1-1.1_000219 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R00443 UTP:RNA uridylyltransferase; UTP + RNA <=> Diphosphate + RNA
KEGG reaction
 R00442 CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed); CTP + RNA <=> Diphosphate + RNA
KEGG reaction
 R00441 GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed); GTP + RNA <=> Diphosphate + RNA
KEGG reaction
 R00435 ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase; ATP + RNA <=> Diphosphate + RNA
Ortholog
 N0.HOG0001347 DNA-directed RNA polymerase subunit beta
KEGG gene
 K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] kornec03020
Gene Ontology
 GO:1990234 transferase complex
Gene Ontology
 GO:1902494 catalytic complex
Gene Ontology
 GO:0061695 transferase complex, transferring phosphorus-containing groups
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0032991 protein-containing complex
Gene Ontology
 GO:0030880 RNA polymerase complex
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0000428 DNA-directed RNA polymerase complex
Eggnog Protein
 EP:rpoB
Eggnog Ortholog
 EO:COG0085
Eggnog Description
 ED:DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EC Number
 EC:2.7.7.6 DNA-directed RNA polymerase; RNA polymerase; RNA nucleotidyltransferase (DNA-directed); RNA polymerase I; RNA polymerase II; RNA polymerase III; C RNA formation factors; deoxyribonucleic acid-dependent ribonucleic acid polymerase; DNA-dependent ribonucleate nucleotidyltransferase; DNA-dependent RNA nucleotidyltransferase; DNA-dependent RNA polymerase; ribonucleate nucleotidyltransferase; ribonucleate polymerase; C ribonucleic acid formation factors; ribonucleic acid nucleotidyltransferase; ribonucleic acid polymerase; ribonucleic acid transcriptase; ribonucleic polymerase; ribonucleic transcriptase; RNA nucleotidyltransferase; RNA transcriptase; transcriptase; RNA nucleotidyltransferase I
Gene Product
 DNA-directed RNA polymerase subunit beta

Occurs in the following pathway maps:

Pathway Description
kornec03020 RNA polymerase

Sequences

Nucleotide sequence (GC-content: 52.9 %):

GTGAATAGTTTGGCTGGACATTTAGTTAAGTACGGTAAGCACCGTACCCGTCGTTCTTACTCCCGAATCAAGGAAGTCTTGGATCTGCCTAACTTGATCGAGATTCAAACCGATTCTTACAATTGGTTTATGGACAAGGGTTTGCGGGAAATGTTTGACGATATTATGCCGATCGATGATTTCCAGGGGAAGCTATCCTTGGAATTCGTTGACTACCAATTGTTGGAACCAAAGTACACGGTCGCTGAAGCGCGTGAACATGACGCAAACTACTCAGCACCACTGCACGTAACGTTACGCCTGACCAACCACGAAACGGGCGAAATCAAGTCCCAAGACGTCTTCTTTGGTGACTTCCCACTGATGACGGACCAAGGGACCTTCATCATCAACGGGGCCGAACGGGTTATCGTATCCCAATTAGTTCGTTCCCCAGGGGTTTACTACAACGAAGAAGCCGACAAGAATGGGCGCCCAAGCTACGGTGCCAACTTCATCCCGAACCGGGGGGCTTGGCTAGAATACGAAACCGACGCTAAGGGAATTTCCTACGTCCGTATCGACCGGACCCGTAAGCTACCAATTACGGAATTAGTTCGGGCCCTTGGTTTTGGTTCCGATGACGAAATTTGGGACATGTTGGGGAGCGAATCAGAATCCCTGAACGCCACCATTGAAAAGGACCTACACAAGGAACCGGAAGACTCCCGGGTTGAAGAATCCTTAAAGGATATCTACGAACGGCTCCGTCCAGGTGAACCGAAGACGGCCGACTCCGCACGGTCCCTTTTGACGACCCGCTTCTTTGATCCAAAGCGCTACGACATGGCGCCAGTTGGTCGTTACAAGACTAACAAGAAGCTGCAAATGAAGTACCGTTTGTTAGGTCTGACCCTGGCTGAAACCTTGGCCGACCCAGAAACCGGTGAAATTATCGCCAAGGACGGGGACGTCATTACTAAGGAAGTCTTAAAGGAACTCGAACCGGTTCTGGAACAAGACGACTTTAAGATGATCACCTACACGCCATCCGATGAAGCAGTGGTAACCGCGCCGGTTCAACTGCAAAAGATTATGGTTTACTCCAAGAACGACCCTGAACGCAAGGTGCCGGTGGTATCTAACGGTCACATCTCCTTGGACTTAAAGCACATCCAACCAGCCGACATCCTGGCTTCGATCAACTACTTCTTGAACTTACAAGAAGGGATCGGGACTACCGATGACATCGACCACTTGGGTAACCGGCGGATTCGTTCCGTTGGGGAACTGTTGCAAAACCAATTCCGGATCGGGCTCGCCCGGATGGAACGGGTGGTTCGCGAACGGATGTCAATCCAAGACATCAACACCGTAACGCCACAACAACTGATCAACATTCGCCCAGTCGTGGCTTCAATTAAGGAATTCTTTGGTTCCTCCCAACTTTCCCAGTTCATGGACCAGACCAACCCACTGGGTGAATTGACCCACAAGCGGCGTCTGTCCGCCCTGGGACCGGGTGGTTTGACGCGTGACCGGGCCGGTTATGAAGTCCGGGACGTTCACTATACCCACTACGGCCGGATGTGCCCAATCGAAACGCCGGAAGGACCGAACATCGGGTTGATCAACTCGCTGTCCTCTTACGCCCGGGTGAACGCATACGGCTTTATCGAAACGCCGTACCGTCGTGTCTCATGGGCCGACCACAAGGTAACCGACCGGATCGACTACCTGACGGCCGACGAAGAAGATAACTTCATCATCGCCCAGGCCAACACGCCACTGAACGAAGATGGTTCCTTTGTTCACGACGAAATCATGTGCCGTGATAAGGAAGACTACATCGAAACGGCGCCAGAAAACGTCGACTACATGGACGTTTCGCCAAAGCAAGTGGTTTCCGTTGCCTCCGCATGTATTCCGTTCTTGGAAAACGACGACTCCAACCGGGCCTTGATGGGTGCCAACATGCAACGGCAAGCCGTTCCGTTGATTAACCCACACGCTCCGTTGATCGGGACCGGGATTGAATACAAGGCCGCCCACGACTCCGGGGTCGCTTTGATCGCTAAGAACAGTGGGGCCGTTGAATACGTTGACGCCCGCGAAGTACGGGTACGCCAAGAAGACGGAACGTTAGACACTTACAAGCTGATGAAGTTCCGCCGCTCTAACGGTGGTAAGAACTACAACCAACGGCCAATTGTTAAGGTTGGCGAATGGGTTGACGCTGATGACGTCTTAGCCGACGGACCATCAATGGAACAAGGGGAATTAGCCCTTGGTCAAAACCCACTGATCGCCTTCATGACTTGGCAAGGTTACAACTTCGAAGATGCCATCGCCATTAACGAACGCCTAGTTAAAGACGACGTTTACACTTCGATCCACATCGAATCTTACGAATCCGAAGCCCGCGAAACTAAGCTCGGACCAGAAGAAATGACGCGCGAAATTCCAAACGTCAGTGAAGACGCCCGCAAGGACCTTGATGAATCCGGGGTGATCCGGGTAGGGGCCGAAGTCCACGATGGTGACATTTTGGTTGGTAAGGTAACGCCAAAGGGGGTTACCGAACTATCCGCCGAAGAACGGCTCTTACACGCCATCTTTGGTGAAAAGTCACGCGAAGTCCGTGATACCTCCCTCAGGGTGCCACACGGCGGTGGCGGGATCATCCAAGACGTGAAGGTCTTTACCCGCGAAAACGGTGACGAATTAGCCCCAGGGGTTAACAAGATGGTCCGTGTTTACATCGCCCAGAAGCGGAAGATCCAAGTCGGGGACAAGATGTCCGGTCGTCACGGGAACAAGGGGACGGTTTCGATCGTCGTTCCAGAAGAAGACATGCCGTACATGCCAGATGGGACCCCAATTGACATTATGCTGTCACCAATGGGTGTGCCGTCCCGTATGAACATCGGTCAGGTGATCGAACTTCACTTGGGGATGGCTGCTCGCGAGCTGGGGATCCACATTGCCACGCCAGTCTTTGATGGTGCCAACGACCAAGACGTTTGGGATGCCGTTAAGGAAGCCGGCTTACCGTCCGATGGGAAGACGATCCTTTACGATGGTCGGACCGGGGAACCATTTGAACAACGGGTTACCGTTGGGGTCATGCACTACCTGAAGCTGGCCCACATGGTTGACGACAAGATCCACGCCCGTTCGACTGGTCCATACTCACTGGTTACCCAACAACCACTTGGGGGGAAGGCCCAATTCGGGGGACAGCGGTTCGGTGAAATGGAAGTTTGGGCCCTGGAAGCATACGGGGCTGCTTACACCCTGCAAGAAATCTTGACTTACAAGTCTGACGATACGGTCGGCCGGGTAAATACTTACCAAGCCATCATTGACGGGGACCAAATTCCAAAGCCAGGGGTACCGGAATCCTTCCGTGTGCTGGTTAAGGAATTGCAATCCCTTGGGTTAGACATGAAGGTCTTAGATGACAAGCACGAAGAAATCCAGCTTAAGAGCATGGATGAAGACGTTGCTGACGTTCGGAAACTGGCCCGCCGTGGCCACGAAACGCTGGAAGAACAACCAGCGCAAGCGACGAGCGCCCAAGACGAAGCCAAGCAAGATTAG

Protein sequence:

MNSLAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTDSYNWFMDKGLREMFDDIMPIDDFQGKLSLEFVDYQLLEPKYTVAEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYNEEADKNGRPSYGANFIPNRGAWLEYETDAKGISYVRIDRTRKLPITELVRALGFGSDDEIWDMLGSESESLNATIEKDLHKEPEDSRVEESLKDIYERLRPGEPKTADSARSLLTTRFFDPKRYDMAPVGRYKTNKKLQMKYRLLGLTLAETLADPETGEIIAKDGDVITKEVLKELEPVLEQDDFKMITYTPSDEAVVTAPVQLQKIMVYSKNDPERKVPVVSNGHISLDLKHIQPADILASINYFLNLQEGIGTTDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDINTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYARVNAYGFIETPYRRVSWADHKVTDRIDYLTADEEDNFIIAQANTPLNEDGSFVHDEIMCRDKEDYIETAPENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPHAPLIGTGIEYKAAHDSGVALIAKNSGAVEYVDAREVRVRQEDGTLDTYKLMKFRRSNGGKNYNQRPIVKVGEWVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARETKLGPEEMTREIPNVSEDARKDLDESGVIRVGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTRENGDELAPGVNKMVRVYIAQKRKIQVGDKMSGRHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGVPSRMNIGQVIELHLGMAARELGIHIATPVFDGANDQDVWDAVKEAGLPSDGKTILYDGRTGEPFEQRVTVGVMHYLKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVNTYQAIIDGDQIPKPGVPESFRVLVKELQSLGLDMKVLDDKHEEIQLKSMDEDVADVRKLARRGHETLEEQPAQATSAQDEAKQD

GenBank Info

locus_tag - FAM19471-i1-1.1_000219
EC_number - 2.7.7.6
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391598.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DNA-directed RNA polymerase subunit beta
protein_id - extdb:FAM19471-i1-1.1_000219

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
FAM19471-i1-1.1_000218
FAM19471-i1-1.1_000220