update range to 10000 bp
locus tag: FAM19471-i1-1.1_000228 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rplC
Ortholog
 N0.HOG0001341 50S ribosomal protein L3
KEGG gene
 K02906 RP-L3, MRPL3, rplC; large subunit ribosomal protein L3 kornec03010
Gene Ontology
 GO:2000234 positive regulation of rRNA processing
Gene Ontology
 GO:2000232 regulation of rRNA processing
Gene Ontology
 GO:0090070 positive regulation of ribosome biogenesis
Gene Ontology
 GO:0090069 regulation of ribosome biogenesis
Gene Ontology
 GO:0080090 regulation of primary metabolic process
Gene Ontology
 GO:0065007 biological regulation
Gene Ontology
 GO:0060255 regulation of macromolecule metabolic process
Gene Ontology
 GO:0051254 positive regulation of RNA metabolic process
Gene Ontology
 GO:0051252 regulation of RNA metabolic process
Gene Ontology
 GO:0051173 positive regulation of nitrogen compound metabolic process
Gene Ontology
 GO:0051171 regulation of nitrogen compound metabolic process
Gene Ontology
 GO:0050794 regulation of cellular process
Gene Ontology
 GO:0050789 regulation of biological process
Gene Ontology
 GO:0048522 positive regulation of cellular process
Gene Ontology
 GO:0048518 positive regulation of biological process
Gene Ontology
 GO:0045935 positive regulation of nucleobase-containing compound metabolic process
Gene Ontology
 GO:0044089 positive regulation of cellular component biogenesis
Gene Ontology
 GO:0044087 regulation of cellular component biogenesis
Gene Ontology
 GO:0031325 positive regulation of cellular metabolic process
Gene Ontology
 GO:0031323 regulation of cellular metabolic process
Gene Ontology
 GO:0019222 regulation of metabolic process
Gene Ontology
 GO:0019219 regulation of nucleobase-containing compound metabolic process
Gene Ontology
 GO:0010628 positive regulation of gene expression
Gene Ontology
 GO:0010604 positive regulation of macromolecule metabolic process
Gene Ontology
 GO:0010468 regulation of gene expression
Gene Ontology
 GO:0009893 positive regulation of metabolic process
Gene Ontology
 GO:0008150 biological_process
Eggnog Protein
 EP:rplC
Eggnog Ortholog
 EO:COG0087
Eggnog Description
 ED:One of the primary rRNA binding proteins
Gene Product
 50S ribosomal protein L3

Occurs in the following pathway maps:

Pathway Description
kornec03010 Ribosome

Sequences

Nucleotide sequence (GC-content: 49.6 %):

ATGACCAAAGGAATCTTAGGTAAGAAGGTCGGGATGACTCAAGTCTTCACTGACAACGGTGAATTGGTTCCAGTTACTGTTATTGACGTAACGCCAAACGTTGTTATGCAAGTTAAGACCCTTGAAAATGACGGTTACAGTGCCGTTCAACTCGGGTTCGACGACAAGCGCGAAGTTCTGAGCAACAAGCCCGAACAAGGTCATGCAGCAAAGGCTAACACGACTCCTAAGCGCTTCATCGGTGAAATCCGCGACGCTGAATTAGGAGACGACATCAAAGTTGGGGATAAGGTAGCAGCCGACATTTTCGCAGAAGGCGAAACGGTCGACGTTACTGGTACCACCAAGGGTCATGGTTACCAAGGTAACATCCATAAGGACGGCCAACGGCGTGGGCCAATGGCGCACGGTTCTCGTTACCACCGTCGCCCAGGTTCACTTGGTGCCATCATCAACCACGTGTTCAAGGGTAAGAAGCTGCCAGGTCGGATGGGTAACAACACCCGGACTGTGCAACACCTGCGGATCGTTAAGGTCGACACTGAAAACAACGTTCTCTTAATCAAGGGTAACGTTCCTGGTGCCAACAAGTCCTTTGTTACGATCAAGAACTCCGTTAAGGCTAACACTAAGAAGAGCCTTAGCAAGCAATCCAACAAGTAA

Protein sequence:

MTKGILGKKVGMTQVFTDNGELVPVTVIDVTPNVVMQVKTLENDGYSAVQLGFDDKREVLSNKPEQGHAAKANTTPKRFIGEIRDAELGDDIKVGDKVAADIFAEGETVDVTGTTKGHGYQGNIHKDGQRRGPMAHGSRYHRRPGSLGAIINHVFKGKKLPGRMGNNTRTVQHLRIVKVDTENNVLLIKGNVPGANKSFVTIKNSVKANTKKSLSKQSNK

GenBank Info

gene - rplC
locus_tag - FAM19471-i1-1.1_000228
inference - COORDINATES: similar to AA sequence:RefSeq:WP_007124129.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 50S ribosomal protein L3
protein_id - extdb:FAM19471-i1-1.1_000228

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

FAM19471-i1-1.1_000227
FAM19471-i1-1.1_000229