update range to 10000 bp
locus tag: FAM19471-i1-1.1_000229 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rplD
Ortholog
 N0.HOG0001340 50S ribosomal protein L4
KEGG gene
 K02926 RP-L4, MRPL4, rplD; large subunit ribosomal protein L4 kornec03010
Gene Ontology
 GO:1990904 ribonucleoprotein complex
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901363 heterocyclic compound binding
Gene Ontology
 GO:0097159 organic cyclic compound binding
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044446 obsolete intracellular organelle part
Gene Ontology
 GO:0044445 obsolete cytosolic part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044422 obsolete organelle part
Gene Ontology
 GO:0044391 ribosomal subunit
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044267 -
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043604 amide biosynthetic process
Gene Ontology
 GO:0043603 cellular amide metabolic process
Gene Ontology
 GO:0043232 intracellular non-membrane-bounded organelle
Gene Ontology
 GO:0043229 intracellular organelle
Gene Ontology
 GO:0043228 non-membrane-bounded organelle
Gene Ontology
 GO:0043226 organelle
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043043 peptide biosynthetic process
Gene Ontology
 GO:0034645 cellular macromolecule biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0032991 protein-containing complex
Gene Ontology
 GO:0022626 cytosolic ribosome
Gene Ontology
 GO:0022625 cytosolic large ribosomal subunit
Gene Ontology
 GO:0019538 protein metabolic process
Gene Ontology
 GO:0015934 large ribosomal subunit
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009059 macromolecule biosynthetic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006518 peptide metabolic process
Gene Ontology
 GO:0006412 translation
Gene Ontology
 GO:0005840 ribosome
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0005198 structural molecule activity
Gene Ontology
 GO:0003735 structural constituent of ribosome
Gene Ontology
 GO:0003723 RNA binding
Gene Ontology
 GO:0003676 nucleic acid binding
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rplD
Eggnog Ortholog
 EO:COG0088
Eggnog Description
 ED:Forms part of the polypeptide exit tunnel
Gene Product
 50S ribosomal protein L4

Occurs in the following pathway maps:

Pathway Description
kornec03010 Ribosome

Sequences

Nucleotide sequence (GC-content: 50.5 %):

ATGACTAGTGTTGCATTATTCAAGCAAGACGGTAGCCAAAACGGCACTGTTGAACTGAACGACAGCGTATTTTCTGTTGAAGCAAACGAATCCGCTGAATTCGATGCGATTCTTCGCCAACGTGCTTCCCTGCGTCAAGGGACTCACGCGGTTAAGAACCGTTCCGCAGTTCGCGGTGGTGGGAAGAAGCCTTGGCGTCAAAAGGGTACTGGTCGTGCCCGTCAAGGTTCCATCCGCGCACCTCAATTCCGTGGCGGTGGGATCGTCTTTGGCCCAACCCCTCGTTCCTACAACTACGCATTACCACGTAAGGTTCGTCAATTAGCCATCAAGTCAGCCCTTTCCCAAAAGGTTGCCAACGACAAGTTCGTTGTTGTTGATGGTTTGAACTTTGACGCACCAAAGACGAAGGAATTCGCTGGCGTAATGAACAACCTCAAGGTTAGCGAAAGGGTCTTAGTTGTGGTTACTGACGAAGACAAGAACGCTCAATTATCAGCACGCAACCTGCCGAAGACGACGGTTGTGACGCCAGCTGGTGTGAACATCTTGAACGTCGTTGACGCCCAAAAGATCATCATTACCCAGTCAGCTCTTTCTCAAGTAGAGGAGGTGCTCGCATAA

Protein sequence:

MTSVALFKQDGSQNGTVELNDSVFSVEANESAEFDAILRQRASLRQGTHAVKNRSAVRGGGKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPTPRSYNYALPRKVRQLAIKSALSQKVANDKFVVVDGLNFDAPKTKEFAGVMNNLKVSERVLVVVTDEDKNAQLSARNLPKTTVVTPAGVNILNVVDAQKIIITQSALSQVEEVLA

GenBank Info

gene - rplD
locus_tag - FAM19471-i1-1.1_000229
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003681573.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 50S ribosomal protein L4
protein_id - extdb:FAM19471-i1-1.1_000229

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_000228
FAM19471-i1-1.1_000230