FAM19471-i1-1.1_000235 - OpenGenomeBrowser

locus tag: FAM19471-i1-1.1_000235 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type	Name	Description	Pathways
Gene Code	rplP
Ortholog	N0.HOG0001334	50S ribosomal protein L16
KEGG gene	K02878	RP-L16, MRPL16, rplP; large subunit ribosomal protein L16	kornec03010
Gene Ontology	GO:1990904	ribonucleoprotein complex
Gene Ontology	GO:1901363	heterocyclic compound binding
Gene Ontology	GO:0097159	organic cyclic compound binding
Gene Ontology	GO:0044464	obsolete cell part
Gene Ontology	GO:0044446	obsolete intracellular organelle part
Gene Ontology	GO:0044445	obsolete cytosolic part
Gene Ontology	GO:0044444	obsolete cytoplasmic part
Gene Ontology	GO:0044424	obsolete intracellular part
Gene Ontology	GO:0044422	obsolete organelle part
Gene Ontology	GO:0044391	ribosomal subunit
Gene Ontology	GO:0043232	intracellular non-membrane-bounded organelle
Gene Ontology	GO:0043229	intracellular organelle
Gene Ontology	GO:0043228	non-membrane-bounded organelle
Gene Ontology	GO:0043226	organelle
Gene Ontology	GO:0032991	protein-containing complex
Gene Ontology	GO:0022626	cytosolic ribosome
Gene Ontology	GO:0022625	cytosolic large ribosomal subunit
Gene Ontology	GO:0019843	rRNA binding
Gene Ontology	GO:0015934	large ribosomal subunit
Gene Ontology	GO:0005840	ribosome
Gene Ontology	GO:0005829	cytosol
Gene Ontology	GO:0005737	cytoplasm
Gene Ontology	GO:0005623	obsolete cell
Gene Ontology	GO:0005622	intracellular anatomical structure
Gene Ontology	GO:0005575	cellular_component
Gene Ontology	GO:0005488	binding
Gene Ontology	GO:0005198	structural molecule activity
Gene Ontology	GO:0003735	structural constituent of ribosome
Gene Ontology	GO:0003723	RNA binding
Gene Ontology	GO:0003676	nucleic acid binding
Gene Ontology	GO:0003674	molecular_function
Eggnog Protein	EP:rplP
Eggnog Ortholog	EO:COG0197
Eggnog Description	ED:Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Gene Product	50S ribosomal protein L16

Occurs in the following pathway maps:

Pathway	Description
kornec03010	Ribosome

Sequences

Nucleotide sequence (GC-content: 49.9 %):

ATGCTAGTACCAAAGCGAGTAAAGCACCGTAAGGTTCAACGCGGTAAGATGCGTGGGGAAGCCAAGGGTGGTAAGACCGTTACTTTTGGTGAATTCGGTCTGCAAGCTCTCGATTCTCACTGGATTTCTAACCGGCAGATCGAAGCCGCTCGTATTGCCATGACGCGTTACATGAAGCGTGGTGGTAAGGTTTGGATCAAGATCTTCCCACACCTTTCTTACACTAGTAAGGGTGTTGGTACCCGGATGGGTAACGGTAAGGGTGCTCCTGAAGGTTGGGTAGCCCCTGTTAAGCGTATGAAGGTGATGTTCGAAGTTGCTGGGGTTCCTGAAGAAGTTGCCCGTGAAGCCCTTCGTCTTGCCGGAAACAAGTTGCCAGTTCGCACTAAGATCGTTAAGCGTGAGGAAGTAGGTGGACAATCTAATGAAGACTAA

Protein sequence:

MLVPKRVKHRKVQRGKMRGEAKGGKTVTFGEFGLQALDSHWISNRQIEAARIAMTRYMKRGGKVWIKIFPHLSYTSKGVGTRMGNGKGAPEGWVAPVKRMKVMFEVAGVPEEVAREALRLAGNKLPVRTKIVKREEVGGQSNED

GenBank Info

gene - rplP
locus_tag - FAM19471-i1-1.1_000235
inference - COORDINATES: similar to AA sequence:RefSeq:WP_010496710.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 50S ribosomal protein L16
protein_id - extdb:FAM19471-i1-1.1_000235

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

Cellular location

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol