update range to 10000 bp
locus tag: FAM19471-i1-1.1_000242 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rpsH
Ortholog
 N0.HOG0001328 30S ribosomal protein S8
KEGG gene
 K02994 RP-S8, rpsH; small subunit ribosomal protein S8 kornec03010
Gene Ontology
 GO:1990904 ribonucleoprotein complex
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044446 obsolete intracellular organelle part
Gene Ontology
 GO:0044445 obsolete cytosolic part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044422 obsolete organelle part
Gene Ontology
 GO:0044391 ribosomal subunit
Gene Ontology
 GO:0043232 intracellular non-membrane-bounded organelle
Gene Ontology
 GO:0043229 intracellular organelle
Gene Ontology
 GO:0043228 non-membrane-bounded organelle
Gene Ontology
 GO:0043226 organelle
Gene Ontology
 GO:0032991 protein-containing complex
Gene Ontology
 GO:0022627 cytosolic small ribosomal subunit
Gene Ontology
 GO:0022626 cytosolic ribosome
Gene Ontology
 GO:0015935 small ribosomal subunit
Gene Ontology
 GO:0005840 ribosome
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005198 structural molecule activity
Gene Ontology
 GO:0003735 structural constituent of ribosome
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rpsH
Eggnog Ortholog
 EO:COG0096
Eggnog Description
 ED:One of the primary rRNA binding proteins
Gene Product
 30S ribosomal protein S8

Occurs in the following pathway maps:

Pathway Description
kornec03010 Ribosome

Sequences

Nucleotide sequence (GC-content: 49.4 %):

ATGTCTATGAGTGATCCAATCGCAGATTTCTTAACTCGGATCCGCAATGCCAACATGGCACACCACGATTCAGTTGAAGCACCTGCATCCAAGATGAAGAAGGACATCGCCGAAATCTTGAAGCAAGAAGGTTTCATCCGCGATGTTGAATACGTTGAAGACAACAAGCAAGGCATCATCCGCGTATTCTTGAAGTACGGCCAAGACGGCGAACGCGTTATTTCCGGTTTAAAGCGGATTTCCAAGCCGGGTCTTCGCTCCTACGTTAAGGCAGACGCTGTGCCGAAGGTCTTAAACGGCTTAGGGATTGCCATCATTTCTACGTCCAACGGCGTGGTTACTGATAAGGTTGCCCGTGCTAAGAAGGTCGGCGGCGAAGTCGTTGCCTACATTTGGTAA

Protein sequence:

MSMSDPIADFLTRIRNANMAHHDSVEAPASKMKKDIAEILKQEGFIRDVEYVEDNKQGIIRVFLKYGQDGERVISGLKRISKPGLRSYVKADAVPKVLNGLGIAIISTSNGVVTDKVARAKKVGGEVVAYIW

GenBank Info

gene - rpsH
locus_tag - FAM19471-i1-1.1_000242
inference - COORDINATES: similar to AA sequence:RefSeq:WP_010022729.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 30S ribosomal protein S8
protein_id - extdb:FAM19471-i1-1.1_000242

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_000241
FAM19471-i1-1.1_000243