FAM19471-i1-1.1_000244 - OpenGenomeBrowser

locus tag: FAM19471-i1-1.1_000244 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type	Name	Description	Pathways
Gene Code	rplR
Ortholog	N0.HOG0001326	50S ribosomal protein L18
KEGG gene	K02881	RP-L18, MRPL18, rplR; large subunit ribosomal protein L18	kornec03010
Gene Ontology	GO:1990904	ribonucleoprotein complex
Gene Ontology	GO:1901363	heterocyclic compound binding
Gene Ontology	GO:0097159	organic cyclic compound binding
Gene Ontology	GO:0044464	obsolete cell part
Gene Ontology	GO:0044446	obsolete intracellular organelle part
Gene Ontology	GO:0044445	obsolete cytosolic part
Gene Ontology	GO:0044444	obsolete cytoplasmic part
Gene Ontology	GO:0044424	obsolete intracellular part
Gene Ontology	GO:0044422	obsolete organelle part
Gene Ontology	GO:0044391	ribosomal subunit
Gene Ontology	GO:0043232	intracellular non-membrane-bounded organelle
Gene Ontology	GO:0043229	intracellular organelle
Gene Ontology	GO:0043228	non-membrane-bounded organelle
Gene Ontology	GO:0043226	organelle
Gene Ontology	GO:0032991	protein-containing complex
Gene Ontology	GO:0022626	cytosolic ribosome
Gene Ontology	GO:0022625	cytosolic large ribosomal subunit
Gene Ontology	GO:0019843	rRNA binding
Gene Ontology	GO:0015934	large ribosomal subunit
Gene Ontology	GO:0008097	5S rRNA binding
Gene Ontology	GO:0005840	ribosome
Gene Ontology	GO:0005829	cytosol
Gene Ontology	GO:0005737	cytoplasm
Gene Ontology	GO:0005623	obsolete cell
Gene Ontology	GO:0005622	intracellular anatomical structure
Gene Ontology	GO:0005575	cellular_component
Gene Ontology	GO:0005488	binding
Gene Ontology	GO:0003723	RNA binding
Gene Ontology	GO:0003676	nucleic acid binding
Gene Ontology	GO:0003674	molecular_function
Eggnog Protein	EP:rplR
Eggnog Ortholog	EO:COG0256
Eggnog Description	ED:This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit
Gene Product	50S ribosomal protein L18

Occurs in the following pathway maps:

Pathway	Description
kornec03010	Ribosome

Sequences

Nucleotide sequence (GC-content: 48.2 %):

GTGATTTCTAAACCAGACAAGAACAAGATCCGTCAACGCCGTCACATGCGCGTTCGCGGTAAGATCTCTGGTACTGCAGAGCGCCCACGTTTAAGTGTTTACCGTTCTAACAAAAACATTTACGCTCAATTAATTGATGACGTAAAGGGTGTGACGCTCGCAAGTGCCTCAACCCAAGATACTGAAGTAAGTGGTAAGACTAAGACCGAACAAGCTGCCGGTGTTGGTGCCCTGATCGCTAAGCGTGGGGTTGAAAAGAACGTTACCACTGTTGTGTTTGACCGTGGGGGTTACCTTTACCATGGTCGGGTACAAGCTTTAGCAGAAGCCGCTCGTGAAAACGGGCTTCAATTCTAA

Protein sequence:

MISKPDKNKIRQRRHMRVRGKISGTAERPRLSVYRSNKNIYAQLIDDVKGVTLASASTQDTEVSGKTKTEQAAGVGALIAKRGVEKNVTTVVFDRGGYLYHGRVQALAEAARENGLQF

GenBank Info

gene - rplR
locus_tag - FAM19471-i1-1.1_000244
inference - COORDINATES: similar to AA sequence:RefSeq:WP_000628816.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 50S ribosomal protein L18
protein_id - extdb:FAM19471-i1-1.1_000244

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

Cellular location

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol