update range to 10000 bp
locus tag: FAM19471-i1-1.1_000248 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 secY
Gene Product
 preprotein translocase subunit SecY
Ortholog
 N0.HOG0001322 preprotein translocase subunit SecY
KEGG gene
 K03076 secY; preprotein translocase subunit SecY kornec02024kornec03060kornec03070
Gene Ontology
 GO:0071944 cell periphery
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0016020 membrane
Gene Ontology
 GO:0005886 plasma membrane
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005575 cellular_component
Eggnog Protein
 EP:secY
Eggnog Ortholog
 EO:COG0201
Eggnog Description
 ED:The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7

Occurs in the following pathway maps:

Pathway Description
kornec02024 Quorum sensing
kornec03060 Protein export
kornec03070 Bacterial secretion system

Sequences

Nucleotide sequence (GC-content: 51.0 %):

ATGTTCACAACCGTCAAAAACGCGTTCCGGGTCAAAGAAATTCGACACCGGATCTTCTTTACCCTGTTCGTGTTGATTGTTTACCGGTTGGGAGCTTCGATCACCGTTCCGGGAGTTAACGCTGCGGCCTTGCAGCAACTCTCGTCATCGGGATTAGCATCTATTCTTAATACCTTTAGTGGTGGGGGTTTGGAAAACTACTCCCTCTTTGCGATGGGGGTTTCGCCGTACATTACGGCCCAAATTGTCGTTCAACTGCTACAAATGGACATCGTGCCGAAGTTCGTTGAATGGTCAAAACAGGGTGAAGTTGGACGGCGGAAATTAAACCAGGCGACTAGGTGGTTAACGATTATGTTGGGCTTTGTCCAGTCGATCGGGATCACCGCCGGGTTCAACGCCCTCTCCACCATTAAACTGGTGAATAATCCGGGGATGAAGACCTACCTCACGATTGGTCTCATCCTGACGGCTGGAACAATGTTTGCGACCTGGATGGGGGACATGATTACCGAGCGGGGACTTGGGAACGGGGTTTCCATGTTGATCTTTGCCGGGATCATCGCCCAGATGCCAAGCGCAATCCAGCAGTTGTGGACGGATCAAATCACTGGCGAATCCGGGAGTGCCCTTTGGATGGGCATCGGGTTCATTGCGCTGGTTGTGGTGGCTTTGCTGATCATCGTTGCCTTTGTAACGTGGGTTCAGCAAGCTGAACGGCGTTTGCCGATTCAGTACACCCGGCGGACGACCGTCTCGCCGGCCAATAGCTACCTGCCATTAAAGATTAACGTTTCCGGGGTGATCCCGGTTATCTTTGCCGGTTCGGTTATTTCGACGCCGCAAACGATCTTAATGGCCTTTCAGCAAAATCATTCCGGGGATACTTGGTACCAAGTTATGACCAGTATCTTTAACCTTCAATCGGGTCCCGGGATAACCCTGTACATCTTCTTGATCGTTGTGTTTACCTTCTTCTACGCCTTCGTTCAGGTTAACCCGGAAAAATTAGCCGAAAACTTGCAAAAGCAAGGCTCCTACATTTCGGGGGTTTGGCCGGGGAAGGGGACCCAAGACTTTGTCTCGGGGCTCCTGATGCGGCTATCGACCGTTGGGGCCCTTTTCTTGGGCCTGATTTCTCTGATTCCATTGATTGCTTCCAACGTTTGGAACTTAAGCCAATCAATCGGGCTTGGGGGAACGAGTTTACTGATCGTCGTCCAAATCGCCTTGGACGTCGTCCGGCAACTAAACGGGTTGACGATGAAGCGTGAATACATTGGGTTTATCCATGAATAG

Protein sequence:

MFTTVKNAFRVKEIRHRIFFTLFVLIVYRLGASITVPGVNAAALQQLSSSGLASILNTFSGGGLENYSLFAMGVSPYITAQIVVQLLQMDIVPKFVEWSKQGEVGRRKLNQATRWLTIMLGFVQSIGITAGFNALSTIKLVNNPGMKTYLTIGLILTAGTMFATWMGDMITERGLGNGVSMLIFAGIIAQMPSAIQQLWTDQITGESGSALWMGIGFIALVVVALLIIVAFVTWVQQAERRLPIQYTRRTTVSPANSYLPLKINVSGVIPVIFAGSVISTPQTILMAFQQNHSGDTWYQVMTSIFNLQSGPGITLYIFLIVVFTFFYAFVQVNPEKLAENLQKQGSYISGVWPGKGTQDFVSGLLMRLSTVGALFLGLISLIPLIASNVWNLSQSIGLGGTSLLIVVQIALDVVRQLNGLTMKREYIGFIHE

GenBank Info

gene - secY
locus_tag - FAM19471-i1-1.1_000248
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391590.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - preprotein translocase subunit SecY
protein_id - extdb:FAM19471-i1-1.1_000248

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

Cellular location expand

Responsible annotations:
SL-0039: GO:0005886 plasma membrane
SL-0162: GO:0016020 membrane
FAM19471-i1-1.1_000247
FAM19471-i1-1.1_000249