update range to 10000 bp
locus tag: FAM19471-i1-1.1_000254 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R00443 UTP:RNA uridylyltransferase; UTP + RNA <=> Diphosphate + RNA
KEGG reaction
 R00442 CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed); CTP + RNA <=> Diphosphate + RNA
KEGG reaction
 R00441 GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed); GTP + RNA <=> Diphosphate + RNA
KEGG reaction
 R00435 ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase; ATP + RNA <=> Diphosphate + RNA
Ortholog
 N0.HOG0001316 DNA-directed RNA polymerase subunit alpha
KEGG gene
 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] kornec03020
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0097747 RNA polymerase activity
Gene Ontology
 GO:0097659 nucleic acid-templated transcription
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034654 nucleobase-containing compound biosynthetic process
Gene Ontology
 GO:0034645 cellular macromolecule biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034062 5'-3' RNA polymerase activity
Gene Ontology
 GO:0032774 RNA biosynthetic process
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0016779 nucleotidyltransferase activity
Gene Ontology
 GO:0016772 transferase activity, transferring phosphorus-containing groups
Gene Ontology
 GO:0016740 transferase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009059 macromolecule biosynthetic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006354 DNA-templated transcription elongation
Gene Ontology
 GO:0006351 DNA-templated transcription
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rpoA
Eggnog Ortholog
 EO:COG0202
Eggnog Description
 ED:DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EC Number
 EC:2.7.7.6 DNA-directed RNA polymerase; RNA polymerase; RNA nucleotidyltransferase (DNA-directed); RNA polymerase I; RNA polymerase II; RNA polymerase III; C RNA formation factors; deoxyribonucleic acid-dependent ribonucleic acid polymerase; DNA-dependent ribonucleate nucleotidyltransferase; DNA-dependent RNA nucleotidyltransferase; DNA-dependent RNA polymerase; ribonucleate nucleotidyltransferase; ribonucleate polymerase; C ribonucleic acid formation factors; ribonucleic acid nucleotidyltransferase; ribonucleic acid polymerase; ribonucleic acid transcriptase; ribonucleic polymerase; ribonucleic transcriptase; RNA nucleotidyltransferase; RNA transcriptase; transcriptase; RNA nucleotidyltransferase I
Gene Product
 DNA-directed RNA polymerase subunit alpha

Occurs in the following pathway maps:

Pathway Description
kornec03020 RNA polymerase

Sequences

Nucleotide sequence (GC-content: 47.6 %):

ATGATCGAATTTGAAAAACCAAACATCCACAAAGTTGAAGAAACAGACAACTACGGTAAGTTTGTCGTAGAACCGTTGGAACGCGGTTACGGGACGACTCTGGGTAACTCTCTTCGGCGTGTTATGCTGGCATCCCTGCCAGGGGCAGCCATCACCAGCATTCAAATTGATGGTGTTCTGCATGAATTCAGCACGGTTCAAGGGGTTACGGAAGACGTTACGCAGATTATCTTGAACTTAAAGCAAGTTGCTTTAAAGATTGATTCTGAGGACGCTAAGGACCTTGAAATTGACGTTAAGGGTCCGGCCGAAGTAACGGCTGCCGACATCCAAGGTGACGGCGATGTTACTATCCTGAACTCTGACCTTCACATTGCGACGGTTTCCGACGGTGCCGAATTGCACGTTAAGATGACCGCTGATAAGGGTCGTGGTTACTCATCTGCTGATGATAACAAGACTCGTATGGAGGGCTTGGCAATTGGTGTCTTACCAATTGATTCCATCTACACCCCGATCGAACGTGTTAACTACACGGTGGAAAACACCCGGGTGGGGCAAAGCAACGACTACGATAAGCTGACCCTTGACGTTTGGACTAATGGTTCCTTAACGCCAACCGAAGCAATCAGTCTTGCTGCTAAGATCCTCACTGAACACCTGACGATGTTCGTCAACCTCACCGAAGAAGCACAAGTAACTCAAGTGATGGTTGAACGGGAAGAAACCCACCAAGAAAAGGTGCTTGACAAGACCATCGAAGAACTTGACCTGTCTGTACGTTCATACAACTGTTTGAAGCGTGCTGACATCCAAACCGTAAAGGACTTAACTGAACGGACCGAAGCCGACATGATGAAGGTTCGGAACCTTGGGACGAAGTCATTGGATGAAATCAAGCTCAAGTTGGCTGAACTTGGCGTTGGTTTTCGCCAAGAAGATTAA

Protein sequence:

MIEFEKPNIHKVEETDNYGKFVVEPLERGYGTTLGNSLRRVMLASLPGAAITSIQIDGVLHEFSTVQGVTEDVTQIILNLKQVALKIDSEDAKDLEIDVKGPAEVTAADIQGDGDVTILNSDLHIATVSDGAELHVKMTADKGRGYSSADDNKTRMEGLAIGVLPIDSIYTPIERVNYTVENTRVGQSNDYDKLTLDVWTNGSLTPTEAISLAAKILTEHLTMFVNLTEEAQVTQVMVEREETHQEKVLDKTIEELDLSVRSYNCLKRADIQTVKDLTERTEADMMKVRNLGTKSLDEIKLKLAELGVGFRQED

GenBank Info

locus_tag - FAM19471-i1-1.1_000254
EC_number - 2.7.7.6
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003701335.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DNA-directed RNA polymerase subunit alpha
protein_id - extdb:FAM19471-i1-1.1_000254

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
FAM19471-i1-1.1_000253
FAM19471-i1-1.1_000255