update range to 10000 bp
locus tag: FAM19471-i1-1.1_000259 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 truA
Gene Product
 tRNA pseudouridine(38-40) synthase TruA
Ortholog
 N0.HOG0001168 tRNA pseudouridine(38-40) synthase TruA
KEGG gene
 K06173 truA, PUS1; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0031119 tRNA pseudouridine synthesis
Gene Ontology
 GO:0016866 intramolecular transferase activity
Gene Ontology
 GO:0016853 isomerase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009982 pseudouridine synthase activity
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008033 tRNA processing
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006400 tRNA modification
Gene Ontology
 GO:0006399 tRNA metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0001522 pseudouridine synthesis
Eggnog Protein
 EP:truA
Eggnog Ortholog
 EO:COG0101
Eggnog Description
 ED:Formation of pseudouridine at positions 38
EC Number
 EC:5.4.99.12 tRNA pseudouridine38-40 synthase; TruA; tRNA pseudouridine synthase I; PSUI; hisT (gene name)

Sequences

Nucleotide sequence (GC-content: 56.1 %):

GTGCACCGTTATAAGATAACCTTTGCCTACGACGGCAGTAACTTTGCTGGCTTTCAGGTCCAGCCCGGCGAACGAACCGTTCAGCAGGTCCTCGAACGGGCCGTTAATAAGATCGCTAAAAAACCACAACCGCCGCTAATGGTCTTCGGTTCCGGACGTACCGACGCTGGCGTTCACGCCCTCGGTCAGGTCGCCCACTTTGACTTACCATACCAAATTCCGGGGCCGTCCTTGGTGCGGGCCCTGAATTCAAGCCTCCCCCTCGACGTCTTGGTGAAGGAGGCAACAGAAGTGGCGCCGGACTTTCACGCCCGCTTTGATGCCCACCATAAGCGCTACCGCTACCGGGTGGTGGGGGGGGAGTTCACCAACCCCTTTAAGCGTAATTACACCGGCCATTACAAGTACCCGGTCGACGTTGAACGGATGCAAACAGCGGCCCAGGACTTCGTTGGTGAACACGACTTCACCTCCTTTGTTGCCTCTGGGTCGCAAGCGACCAGCAACGTTCGCCGCATCGATGAGGTAACCGTGGTTCGGGATGAAGAAAACGACGAGGTGGTCTTTGACTTCGTTGGTAATGGTTTTTTGTATAACCAGGTCCGGATTATGGTGGCCTTCTTACTGGAGATTGGTAACGGCCGCCGCCCCGTCGATGACGTTATGCGGGTAATGAAGGCCAAGAACCGTGATCTCGCCCGGGGAACGGCGCCGGCCAGTGGCTTATACCTGGTGGAAGTGACCTATGATTCCCCGGCGAATTCACAAAATGATTGA

Protein sequence:

MHRYKITFAYDGSNFAGFQVQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHALGQVAHFDLPYQIPGPSLVRALNSSLPLDVLVKEATEVAPDFHARFDAHHKRYRYRVVGGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTVVRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAPASGLYLVEVTYDSPANSQND

GenBank Info

gene - truA
locus_tag - FAM19471-i1-1.1_000259
EC_number - 5.4.99.12
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004562967.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - tRNA pseudouridine(38-40) synthase TruA
protein_id - extdb:FAM19471-i1-1.1_000259

Gene Locus

Located on scaffold FAM19471-i1-1_scf2

FAM19471-i1-1.1_000258
FAM19471-i1-1.1_000260