update range to 10000 bp
locus tag: FAM19471-i1-1.1_000284 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R02098 ATP:dUMP phosphotransferase; ATP + dUMP <=> ADP + dUDP kornec00240kornec01100
KEGG reaction
 R02094 ATP:dTMP phosphotransferase; ATP + dTMP <=> ADP + dTDP kornec00240kornec01100
Ortholog
 N0.HOG0001281 dTMP kinase
KEGG gene
 K00943 tmk, DTYMK; dTMP kinase [EC:2.7.4.9] kornec00240kornec01100
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901566 organonitrogen compound biosynthetic process
Gene Ontology
 GO:1901564 organonitrogen compound metabolic process
Gene Ontology
 GO:1901362 organic cyclic compound biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901293 nucleoside phosphate biosynthetic process
Gene Ontology
 GO:1901137 carbohydrate derivative biosynthetic process
Gene Ontology
 GO:1901135 carbohydrate derivative metabolic process
Gene Ontology
 GO:0090407 organophosphate biosynthetic process
Gene Ontology
 GO:0072528 pyrimidine-containing compound biosynthetic process
Gene Ontology
 GO:0072527 pyrimidine-containing compound metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0055086 nucleobase-containing small molecule metabolic process
Gene Ontology
 GO:0050145 nucleoside monophosphate kinase activity
Gene Ontology
 GO:0046940 nucleoside monophosphate phosphorylation
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0046385 deoxyribose phosphate biosynthetic process
Gene Ontology
 GO:0046077 dUDP metabolic process
Gene Ontology
 GO:0046075 dTTP metabolic process
Gene Ontology
 GO:0046072 dTDP metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044281 small molecule metabolic process
Gene Ontology
 GO:0044271 cellular nitrogen compound biosynthetic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0034654 nucleobase-containing compound biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0019692 deoxyribose phosphate metabolic process
Gene Ontology
 GO:0019637 organophosphate metabolic process
Gene Ontology
 GO:0019438 aromatic compound biosynthetic process
Gene Ontology
 GO:0019205 nucleobase-containing compound kinase activity
Gene Ontology
 GO:0018130 heterocycle biosynthetic process
Gene Ontology
 GO:0016776 phosphotransferase activity, phosphate group as acceptor
Gene Ontology
 GO:0016772 transferase activity, transferring phosphorus-containing groups
Gene Ontology
 GO:0016740 transferase activity
Gene Ontology
 GO:0016310 phosphorylation
Gene Ontology
 GO:0016301 kinase activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009394 2'-deoxyribonucleotide metabolic process
Gene Ontology
 GO:0009265 2'-deoxyribonucleotide biosynthetic process
Gene Ontology
 GO:0009263 deoxyribonucleotide biosynthetic process
Gene Ontology
 GO:0009262 deoxyribonucleotide metabolic process
Gene Ontology
 GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process
Gene Ontology
 GO:0009219 pyrimidine deoxyribonucleotide metabolic process
Gene Ontology
 GO:0009212 pyrimidine deoxyribonucleoside triphosphate biosynthetic process
Gene Ontology
 GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process
Gene Ontology
 GO:0009202 deoxyribonucleoside triphosphate biosynthetic process
Gene Ontology
 GO:0009200 deoxyribonucleoside triphosphate metabolic process
Gene Ontology
 GO:0009197 pyrimidine deoxyribonucleoside diphosphate biosynthetic process
Gene Ontology
 GO:0009196 pyrimidine deoxyribonucleoside diphosphate metabolic process
Gene Ontology
 GO:0009189 deoxyribonucleoside diphosphate biosynthetic process
Gene Ontology
 GO:0009186 deoxyribonucleoside diphosphate metabolic process
Gene Ontology
 GO:0009165 nucleotide biosynthetic process
Gene Ontology
 GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process
Gene Ontology
 GO:0009147 pyrimidine nucleoside triphosphate metabolic process
Gene Ontology
 GO:0009142 nucleoside triphosphate biosynthetic process
Gene Ontology
 GO:0009141 nucleoside triphosphate metabolic process
Gene Ontology
 GO:0009139 pyrimidine nucleoside diphosphate biosynthetic process
Gene Ontology
 GO:0009138 pyrimidine nucleoside diphosphate metabolic process
Gene Ontology
 GO:0009133 nucleoside diphosphate biosynthetic process
Gene Ontology
 GO:0009132 nucleoside diphosphate metabolic process
Gene Ontology
 GO:0009123 nucleoside monophosphate metabolic process
Gene Ontology
 GO:0009117 nucleotide metabolic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0009041 uridylate kinase activity
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006796 phosphate-containing compound metabolic process
Gene Ontology
 GO:0006793 phosphorus metabolic process
Gene Ontology
 GO:0006753 nucleoside phosphate metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006235 dTTP biosynthetic process
Gene Ontology
 GO:0006233 dTDP biosynthetic process
Gene Ontology
 GO:0006227 dUDP biosynthetic process
Gene Ontology
 GO:0006221 pyrimidine nucleotide biosynthetic process
Gene Ontology
 GO:0006220 pyrimidine nucleotide metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004798 thymidylate kinase activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:tmk
Eggnog Ortholog
 EO:COG0125
Eggnog Description
 ED:Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
EC Number
 EC:2.7.4.9 dTMP kinase; thymidine monophosphate kinase; thymidylate kinase; thymidylate monophosphate kinase; thymidylic acid kinase; thymidylic kinase; deoxythymidine 5'-monophosphate kinase; TMPK; thymidine 5'-monophosphate kinase kornec00240kornec01100
Gene Product
 dTMP kinase

Occurs in the following pathway maps:

Pathway Description
kornec00240 Pyrimidine metabolism
kornec01100 Metabolic pathways

Sequences

Nucleotide sequence (GC-content: 53.8 %):

ATGAGCGGACGATTTATTAGTTTTGAGGGGCCAGACGGGGCCGGGAAGACAAGTGTCTTAACCGCGATCCGGACGGGCCTAGTTAACCAGTTGGGTGATCAAGTTGTCTATACCCGTGAACCCGGGGGAAACCCAATCGCCGAACAAGTACGGGCGGTCTTGTTAGATAAGCAAAACGGGGCGATGGATGACTGGACGGAGGCCTTATTATACGCGGCTTCCCGGCGCCAACACGTGGTTGAAACCCTTAAACCGGCACTTGAAGCGGGGAAGCTAATTTTGTGCGACCGCTACTTGGATAGTTCAATTGCCTACCAGGGTGGGGGACGTGAGTTAGGGATCGACCGAATCTGGGAGTTAAACCAGTACGCCATTGACGGTCTCTTGCCGGACCTAACCATTTTTTTGGACCTCCCCGTGGAAACCGGGTTAGCCCGGATTGAAAAGGGACGGGCGGAGACAATTAACCGCTTGGATGAGCAAACCACCAACTTCCACCGGCGGGTCCGTCAGGCCTACTTAACCCTGGCCGAGCGCTTCCCAGAACGAATTGTGAAGGTAAACGCCGATCAGGAATTAGCGCGGGTAATTGAAGACGTACGAAGCGCAATTCACGCACGTTACGCAGACCTATTTACCAACTAA

Protein sequence:

MSGRFISFEGPDGAGKTSVLTAIRTGLVNQLGDQVVYTREPGGNPIAEQVRAVLLDKQNGAMDDWTEALLYAASRRQHVVETLKPALEAGKLILCDRYLDSSIAYQGGGRELGIDRIWELNQYAIDGLLPDLTIFLDLPVETGLARIEKGRAETINRLDEQTTNFHRRVRQAYLTLAERFPERIVKVNADQELARVIEDVRSAIHARYADLFTN

GenBank Info

locus_tag - FAM19471-i1-1.1_000284
EC_number - 2.7.4.9
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004562764.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - dTMP kinase
protein_id - extdb:FAM19471-i1-1.1_000284

Gene Locus

Located on scaffold FAM19471-i1-1_scf3

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
FAM19471-i1-1.1_000283
FAM19471-i1-1.1_000285