update range to 10000 bp
locus tag: FAM19471-i1-1.1_000286 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R00378 deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed); dTTP + DNA <=> Diphosphate + DNA
KEGG reaction
 R00377 Deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed); dCTP + DNA <=> Diphosphate + DNA
KEGG reaction
 R00376 Deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed); dGTP + DNA <=> Diphosphate + DNA
KEGG reaction
 R00375 Deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed); dATP + DNA <=> Diphosphate + DNA
Ortholog
 N0.HOG0000625 DNA polymerase III subunit delta'
KEGG gene
 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] kornec03030kornec03430kornec03440
Gene Code
 holB
Eggnog Protein
 EP:holB
Eggnog Ortholog
 EO:COG0470
Eggnog Description
 ED:DNA polymerase III
EC Number
 EC:2.7.7.7 DNA-directed DNA polymerase; DNA polymerase I; DNA polymerase II; DNA polymerase III; DNA polymerase alpha; DNA polymerase beta; DNA polymerase gamma; DNA nucleotidyltransferase (DNA-directed); deoxyribonucleate nucleotidyltransferase; deoxynucleate polymerase; deoxyribonucleic acid duplicase; deoxyribonucleic acid polymerase; deoxyribonucleic duplicase; deoxyribonucleic polymerase; deoxyribonucleic polymerase I; DNA duplicase; DNA nucleotidyltransferase; DNA polymerase; DNA replicase; DNA-dependent DNA polymerase; duplicase; Klenow fragment; sequenase; Taq DNA polymerase; Taq Pol I; Tca DNA polymerase
Gene Product
 DNA polymerase III subunit delta'

Occurs in the following pathway maps:

Pathway Description
kornec03030 DNA replication
kornec03430 Mismatch repair
kornec03440 Homologous recombination

Sequences

Nucleotide sequence (GC-content: 54.9 %):

ATGGAGCGTGAGCTAACCGCCACCGCACTACAACCTGAAATCACGGCGCGCTTTGCCAGCCTAATTGAGCGGGGGACGCTGGCTCACGCCTACCTCCTAGTGGGCAACGTCAACATGGGAACGGTCGCGTTAGCAACGGAGGTCGCATTACGCTTGTTTTGCCCCCATCAAGACGACCAGGGGCATCCCGATCGGACGTGCCCAGAGTGCCAGCGGGTTCTTTCGGGGAACCACCCGGACGTGGTGGTTGCCCGTCCCGAGGGGCGTCAGATTAAGGTTGATCAGGTCCGCTATCTAAAGGCTGAATTTTCCAAAACCGGGGTTGAAGGGGAGAAAAAGGTGTTCATCATCGAGGGGGCCGAAACCTTAACCGGCTCGGCTGCTAACTCCTTATTGAAATTTATCGAAGAACCCGGACCGGGGGTCTACATCTTTTTGTTAACTCCTAACAAAAATGCCGTTTTGCAGACGGTTCAATCCCGGTGCCAAGTAATCGAATTACGCCCCTTGCCAAGTGAAATGGTTAAAGAGCAGCTGCAAGAGGCGGGGGTACCAGAATACCTGGGCCCCCTGGCCGCGGGGCTGGGACTAAGCGCCAAGCAGGGGGCCTCTTTGATGGAAGACGACTGGCTCCCCACCAGCGTGAAACTAGTTTTCGACTGGTTTAAGGAGGTAGCTAGTGGCGATCCGCTCAGCTTTGTGGACGTCCAAACTGGTTTTTTAAAGCAGGGTAGCGACCGGGCAAAGCAACTAGTCTTGTTGGACCTAGTGACGATGGTTTGGCGCGACGCCCTCTTGTTAAAGAACCGGGTGACCGAACCAGAGCGGCTTCACTTTCGTCAGTGGCAAGCAGAAGTGGCCCAACTGATCATGCCAAGTTCGGCCCAGCAAGTTCTCGTGGCCAGTGAACTAACCTTAGAGGGGCGCCACTTGCTTGATCAAAACATAAGCTTTCAAAATGTGGTGGAGCAATTAACGCTCCGCCTCCTCTTGGTGATGAAGGGTGACTTTAGTGAGGAAAGGGGCAGCAACCGTGAGTGA

Protein sequence:

MERELTATALQPEITARFASLIERGTLAHAYLLVGNVNMGTVALATEVALRLFCPHQDDQGHPDRTCPECQRVLSGNHPDVVVARPEGRQIKVDQVRYLKAEFSKTGVEGEKKVFIIEGAETLTGSAANSLLKFIEEPGPGVYIFLLTPNKNAVLQTVQSRCQVIELRPLPSEMVKEQLQEAGVPEYLGPLAAGLGLSAKQGASLMEDDWLPTSVKLVFDWFKEVASGDPLSFVDVQTGFLKQGSDRAKQLVLLDLVTMVWRDALLLKNRVTEPERLHFRQWQAEVAQLIMPSSAQQVLVASELTLEGRHLLDQNISFQNVVEQLTLRLLLVMKGDFSEERGSNRE

GenBank Info

gene - holB
locus_tag - FAM19471-i1-1.1_000286
EC_number - 2.7.7.7
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638600.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DNA polymerase III subunit delta'
protein_id - extdb:FAM19471-i1-1.1_000286

Gene Locus

Located on scaffold FAM19471-i1-1_scf3

FAM19471-i1-1.1_000285
FAM19471-i1-1.1_000287