update range to 10000 bp
locus tag: FAM19471-i1-1.1_000288 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rsmI
Ortholog
 N0.HOG0001280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
KEGG gene
 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044085 cellular component biogenesis
Gene Ontology
 GO:0043414 macromolecule methylation
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042254 ribosome biogenesis
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0032259 methylation
Gene Ontology
 GO:0031167 rRNA methylation
Gene Ontology
 GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
 GO:0016072 rRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006364 rRNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0001510 RNA methylation
Gene Ontology
 GO:0000453 enzyme-directed rRNA 2'-O-methylation
Gene Ontology
 GO:0000451 rRNA 2'-O-methylation
Gene Ontology
 GO:0000154 rRNA modification
Eggnog Protein
 EP:rsmI
Eggnog Ortholog
 EO:COG0313
Eggnog Description
 ED:Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
EC Number
 EC:2.1.1.198 16S rRNA (cytidine1402-2'-O)-methyltransferase; RsmI; YraL
Gene Product
 16S rRNA (cytidine(1402)-2'-O)-methyltransferase

Sequences

Nucleotide sequence (GC-content: 55.4 %):

ATGCAAAGACAGGCAAGTTTTCAAGCAACCGAAACGGGGCGGCTGTACTTAGTACCCACTCCCATTGGTAACTTAGACGACATGACCTTCCGGGCGATTAAGGTGCTAAAAGAGGTTGACCTGATTTGTGCCGAGGATACCCGCCACACCCGGCAGCTACTAAACCACTTTGAGATTACCACCAAGGCGATTAGCTTTCACGAACACAACACTGAACAGCGGCTGCCAGAGCTGGTGGCCCGCTTAAAGCAAGGGGAAAACTTGGCCCAGTGCAGTGACGCTGGGATGCCATCGATTTCAGACCCCGGCAAGGAGCTAGTGGCGGCCTGCGTTAAAGAAGGGATTCCGGTGGTCCCCCTCCCCGGGGCCAACGCCGCGCTCACCGCTTTGATTGCTTCAGGACTTTCCCCCCAGCCCTTCTACTTTTACGGTTTCTTGGAGCGTAAGCACCAGCAACAGGTGACAGAATTAACGGCCTTAAGGAACCGGGGCGAAACGATGATTTTTTACGAGGCGCCCCACCGGTTGGCTAAAACCTTAACCACGATGGCGGAGGTTTTTGGAGAGGAGCGCCAAGCCGTTTTGGCCCGGGAATTGACCAAGCGCTACGAAGAGTTTGAGCGGGGCAGCCTAGCGGAACTCGTGGCGTGGGCAAAAGAAGGGGTCCGGGGCGAGTTTGTGGTGATGGTGGCCGGCAATGACCACCCCCAAGAAGATGAACAACGCCCCTCGGGAACGCCCTTAGAACAAATTCAATCCGCCGTGGATGGCGGTCAAAGTCCTAACGCCGCGATTAAGCAGGTCGCCAAAAGGCTCGGCTTAAACCGTCAGGACTTGTATAAGCAGTACCACCAATTATAG

Protein sequence:

MQRQASFQATETGRLYLVPTPIGNLDDMTFRAIKVLKEVDLICAEDTRHTRQLLNHFEITTKAISFHEHNTEQRLPELVARLKQGENLAQCSDAGMPSISDPGKELVAACVKEGIPVVPLPGANAALTALIASGLSPQPFYFYGFLERKHQQQVTELTALRNRGETMIFYEAPHRLAKTLTTMAEVFGEERQAVLARELTKRYEEFERGSLAELVAWAKEGVRGEFVVMVAGNDHPQEDEQRPSGTPLEQIQSAVDGGQSPNAAIKQVAKRLGLNRQDLYKQYHQL

GenBank Info

gene - rsmI
locus_tag - FAM19471-i1-1.1_000288
EC_number - 2.1.1.198
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004562768.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
protein_id - extdb:FAM19471-i1-1.1_000288

Gene Locus

Located on scaffold FAM19471-i1-1_scf3

FAM19471-i1-1.1_000287
FAM19471-i1-1.1_000289