update range to 10000 bp
locus tag: FAM19471-i1-1.1_000327 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0003666 DEAD/DEAH box helicase
KEGG gene
 K02240 comFA; competence protein ComFA
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140097 catalytic activity, acting on DNA
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0071103 DNA conformation change
Gene Ontology
 GO:0070035 obsolete purine NTP-dependent helicase activity
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0051276 chromosome organization
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043140 -
Gene Ontology
 GO:0043138 3'-5' DNA helicase activity
Gene Ontology
 GO:0042623 -
Gene Ontology
 GO:0034645 cellular macromolecule biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0032508 DNA duplex unwinding
Gene Ontology
 GO:0032392 DNA geometric change
Gene Ontology
 GO:0017111 ribonucleoside triphosphate phosphatase activity
Gene Ontology
 GO:0016887 ATP hydrolysis activity
Gene Ontology
 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Gene Ontology
 GO:0016817 hydrolase activity, acting on acid anhydrides
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016462 pyrophosphatase activity
Gene Ontology
 GO:0016043 cellular component organization
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009059 macromolecule biosynthetic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008094 ATP-dependent activity, acting on DNA
Gene Ontology
 GO:0008026 -
Gene Ontology
 GO:0006996 organelle organization
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006310 DNA recombination
Gene Ontology
 GO:0006302 double-strand break repair
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006270 DNA replication initiation
Gene Ontology
 GO:0006268 DNA unwinding involved in DNA replication
Gene Ontology
 GO:0006261 DNA-templated DNA replication
Gene Ontology
 GO:0006260 DNA replication
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004386 helicase activity
Gene Ontology
 GO:0004003 -
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003678 DNA helicase activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:comFA
Eggnog Ortholog
 EO:COG4098
Eggnog Description
 ED:Helicase C-terminal domain protein
Gene Product
 DNA/RNA helicase

Sequences

Nucleotide sequence (GC-content: 57.9 %):

ATGCAAAAAGAAGAATTATACGGGCGCCGGGTTTTAATTAACCAAGCCTTGCCCGCTCCGTTTGGGTTAACGGGGGAAAAGGCGATGGATGAACGGGGACGCTGGGTTACCTGCCGCCGGTGTAACGCCCGCTTAATTAAGGAACGGGTTCGCTTACCAAGTGGGGCCTATTACTGTCCAGTGTGCCTGAATTTGGGGCGGGTGACAAGTCATGATCGATTTTATCACTTAGCCGAACCAAATCAATTTACCCCGCCCACTAACCCGTGCACCTGGCAGGGGCAACTGAGCCCGCTGCAAGAGCGGGTAGCGAGTGAGGTGGCGGCCGGGATGGCGGCCCACCAGCACCGGCTATTATGGGCGGTCACGGGTGCCGGAAAGACCGAGATGATCTTTCCGGCACTAACCGGCGCACTAAAACGGGGTGAACGGGTGGCGGTGGCCTCGCCGCGCGTCGACGTATGCTTGGAGCTCTACCCGCGCCTGCAAGCGGCCTTTGCGGGGGTACCAATTGCCCTGTTGCACGGCAAGAATCCGGCACCCTACCAGTACCGACAGTTGACCATCTGTACCACCCACCAGTTATTACGCTTCTACCACGCCTTTGACAACCTGGTGATCGACGAGGTAGATGCCTTTCCCTTTGCTGGGGATCCGGCCCTGTTATTTGCCGCCCACCAAGCGATCAAAGAGGGCGGGGGACTCCTTTTTCTCACCGCCACCCCGAGCAAGGAATTGCTCCAGCAGGTTCACCAAAAGAAGTTGGCGGTTTCTTACTTGCCCCAACGTTTCCACGGCCACCCGCTACCCCAGATTCAAACCGTGCTGGTTGGCAAGTGGCGGGCGAAGCTAACAAAGGGAAAACTACCCAACGCCGTTTCGGCCTGGTTAAAACAGCGGGTTACTAAGGGACAGGAGTTTTTGTTGTTCCTGCCCCACGTCGCCGACCTCGCTCCGGTGGCCCGGGCGCTCAAAGAAAACTTGGGGGCGGTTAAGTTTATGACGGTGCACGCTAGCGATCCGCAGCGCCTTCAGAAGGTCCAGGCGATGCGGGAGCGCCAGTTGTCTTTTTTGGTGACCACCACCATTTTAGAGCGTGGGGTTACCTTTCCGGGAATTGACGTCGGCGTCTTGGGGGCGGACGAGGAGGTTTTTTCCACGGCGGCGTTAGTCCAAATTGCTGGTCGAGTGGGGCGTTCTAAGGAGCGACCGGGCGGCGCCGTGACCTTTTGGGTTCAGGAAAATAGCCGGCACATTGAGGAGGCCAAGCAACAAATTAAATCGATGAACCGGCGGGCACGGGGGGTGAGCAAATGA

Protein sequence:

MQKEELYGRRVLINQALPAPFGLTGEKAMDERGRWVTCRRCNARLIKERVRLPSGAYYCPVCLNLGRVTSHDRFYHLAEPNQFTPPTNPCTWQGQLSPLQERVASEVAAGMAAHQHRLLWAVTGAGKTEMIFPALTGALKRGERVAVASPRVDVCLELYPRLQAAFAGVPIALLHGKNPAPYQYRQLTICTTHQLLRFYHAFDNLVIDEVDAFPFAGDPALLFAAHQAIKEGGGLLFLTATPSKELLQQVHQKKLAVSYLPQRFHGHPLPQIQTVLVGKWRAKLTKGKLPNAVSAWLKQRVTKGQEFLLFLPHVADLAPVARALKENLGAVKFMTVHASDPQRLQKVQAMRERQLSFLVTTTILERGVTFPGIDVGVLGADEEVFSTAALVQIAGRVGRSKERPGGAVTFWVQENSRHIEEAKQQIKSMNRRARGVSK

GenBank Info

locus_tag - FAM19471-i1-1.1_000327
inference - COORDINATES: similar to AA sequence:RefSeq:WP_004563296.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DNA/RNA helicase
protein_id - extdb:FAM19471-i1-1.1_000327

Gene Locus

Located on scaffold FAM19471-i1-1_scf3

FAM19471-i1-1.1_000326
FAM19471-i1-1.1_000328