update range to 10000 bp
locus tag: FAM19471-i1-1.1_000356 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 type II CRISPR-associated endonuclease Cas1
Ortholog
 N0.HOG0002659 type II CRISPR-associated endonuclease Cas1
KEGG gene
 K15342 cas1; CRISP-associated protein Cas1
Eggnog Protein
 EP:cas1
Eggnog Ortholog
 EO:COG1518
Eggnog Description
 ED:CRISPR (clustered regularly interspaced short palindromic repeat)
Gene Code
 cas1

Sequences

Nucleotide sequence (GC-content: 43.7 %):

ATGGGATGGCGTTCAATAATCATTGGTCAACATGCAAAGATTACCCACTCTACTCATATGATGGTTGTGCAGACTAAAGATGGGATTAATGAAATTCCGATGGATGACATTGCAAAAGTACTAGTTGAAACAACTCAGGCGATGATCTCTTCAGATTTCATGAGTGCATGCCTACAACGGAACATTAAAGTAATCTTTGTCGATCGAAAGTACCAACCGATTGGGGAGACGGTTGGTTATCAGCCAGTAGCGAGGGATTATGAATTGTTGGAACGCCAATTCTTATGGCCCTTGGAGCGAAGGGAACAACTTTGGACTAGGATTGCCCACGCCAAAATCGAGAGCCAAATAAAGGTGGCCCGGCTTAATGGATGCCCGGTTCAAGAACTAGAAAGTGAGTTAGAAGCCATTGAAGTAAATGACGTTTCTAACCGTGAGGCAGTGGTTGCTCGGAAGTATTTCCCATTGCTGTTCGGAAAAGATTTTAGCCGCCGACAGGAGAATCAATATAACGCCGCTCTGGATTACGGATATGCGGTTTTATTAGCGGAGACAAACCAATCGATTACGGAAAATGGTTACCTGGTGGAACTAGGGATTCATCATCAAAATCGAGCAAACAGGTTTAATCTAGGTTCAGACTTGATGGAACCATTTCGACCAGTGATCGACTACTGGGTTACAGGACAAAAGTTTACGGAATTCAATCGCCAAGTCCGAGTTGGCTTAGTGGATGCACTGCATATGGTGATCAAGTATAACGGAACTGAAATGCTAACTCAGAATGCCGTACGACAGTATGTACGGGAATGCCTTGATTACTTGAGTGGTGAGCGGGATGAAATTGAAGTAAAGGTGGAGTTTAAAGATGAGGTACCGAATCATGCGCTTAATGGTCATGTTTGA

Protein sequence:

MGWRSIIIGQHAKITHSTHMMVVQTKDGINEIPMDDIAKVLVETTQAMISSDFMSACLQRNIKVIFVDRKYQPIGETVGYQPVARDYELLERQFLWPLERREQLWTRIAHAKIESQIKVARLNGCPVQELESELEAIEVNDVSNREAVVARKYFPLLFGKDFSRRQENQYNAALDYGYAVLLAETNQSITENGYLVELGIHHQNRANRFNLGSDLMEPFRPVIDYWVTGQKFTEFNRQVRVGLVDALHMVIKYNGTEMLTQNAVRQYVRECLDYLSGERDEIEVKVEFKDEVPNHALNGHV

GenBank Info

gene - cas1
locus_tag - FAM19471-i1-1.1_000356
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003685067.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - type II CRISPR-associated endonuclease Cas1
protein_id - extdb:FAM19471-i1-1.1_000356

Gene Locus

Located on scaffold FAM19471-i1-1_scf4

FAM19471-i1-1.1_000355
FAM19471-i1-1.1_000357