update range to 10000 bp
locus tag: FAM19471-i1-1.1_000402 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 recO
Ortholog
 N0.HOG0003437 DNA repair protein RecO
KEGG gene
 K03584 recO; DNA repair protein RecO (recombination protein O) kornec03440
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043590 bacterial nucleoid
Gene Ontology
 GO:0043232 intracellular non-membrane-bounded organelle
Gene Ontology
 GO:0043229 intracellular organelle
Gene Ontology
 GO:0043228 non-membrane-bounded organelle
Gene Ontology
 GO:0043226 organelle
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009295 nucleoid
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006302 double-strand break repair
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Eggnog Protein
 EP:recO
Eggnog Ortholog
 EO:COG1381
Eggnog Description
 ED:Involved in DNA repair and RecF pathway recombination
Gene Product
 DNA repair protein RecO

Occurs in the following pathway maps:

Pathway Description
kornec03440 Homologous recombination

Sequences

Nucleotide sequence (GC-content: 59.3 %):

ATGGCCCGGGTCAACGAACCCTTTGAAGGGGTGATCATGTACCGGCGCGACTACCGGGAACGCGACCTCCTGGTTAAGATTTTGACGGACCGGCGCGGCCCGCTGATGTTTTTTGTCCGCGGGGCCAAACGCAAGGGCTTTAAGTTGGCGTCAGACATTTTACCCTTCACCTACGGCAGCTACGTGGGGATCCTTGCCGACGAGGGCTTGTCTTACATCGTCTCGGCCCAAGAAACCCACCACCTAACCGGGATCGGCGCCGATTTAAACCGCAACGCCTACGCGACTTACCTGCTAGAACTGGTCGACCAGGCCTTTGAAGAGGGGCGGGCGCTGGGCGGCTGGTACAAGCAGGTGATGGCGGCCCTAAACTTGATCAACACGGGGCGCGACCCCCAGGTAGTCGTGAACGTGTTGGAGGTCCAACTCCTCAACCGGTTCGGGATCGCCCCGGTCTGGGACCGGTGCGTGGTGTGCGGGCGCAGTGATTTGCCGCTGGATTACTCGGAAAAGATGGGCGGGATGCTGTGCCTCCATCACTTTGCAGAGGACCCCTACCGCTTCCACCTCACCCCCAAAACCGTCGCCTACCTCCGGCTGTTTGCGACCCTTAACCTGGCCAAGGTCGATCAGGTACACGTAGACGAGGCGACCAAGCGTCAATTAGGTCGGACGCTGGACAAAATCTACGACGACCAGTTGGGCTTGCGCCTTAAGTCCAAGCGCTTCATCAACGAAATGGATTCCTGGACCAACCGGCTCTTGACCGCCAGAAAGAATCCGGGGACGGACGACGAAAAAAAGCCGGCCGGGAGTTGA

Protein sequence:

MARVNEPFEGVIMYRRDYRERDLLVKILTDRRGPLMFFVRGAKRKGFKLASDILPFTYGSYVGILADEGLSYIVSAQETHHLTGIGADLNRNAYATYLLELVDQAFEEGRALGGWYKQVMAALNLINTGRDPQVVVNVLEVQLLNRFGIAPVWDRCVVCGRSDLPLDYSEKMGGMLCLHHFAEDPYRFHLTPKTVAYLRLFATLNLAKVDQVHVDEATKRQLGRTLDKIYDDQLGLRLKSKRFINEMDSWTNRLLTARKNPGTDDEKKPAGS

GenBank Info

gene - recO
locus_tag - FAM19471-i1-1.1_000402
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003681720.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DNA repair protein RecO
protein_id - extdb:FAM19471-i1-1.1_000402

Gene Locus

Located on scaffold FAM19471-i1-1_scf4

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0187: GO:0009295 nucleoid
FAM19471-i1-1.1_000401
FAM19471-i1-1.1_000403