Annotations

Type Name Description Pathways
Gene Code
rpoD
Gene Product
RNA polymerase sigma factor RpoD
Ortholog
N0.HOG0001104 RNA polymerase sigma factor
KEGG gene
K03086 rpoD; RNA polymerase primary sigma factor kornec02040
Eggnog Protein
EP:sigA
Eggnog Ortholog
EO:COG0568
Eggnog Description
ED:Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth

Occurs in the following pathway maps:

Pathway Description
kornec02040 Flagellar assembly

Sequences

Nucleotide sequence (GC-content: 55.4 %):

ATGGCAAAGAGCAGTAAGAAGAACCGGGTAATTTCGAACTTAGAAGATTTCAACCAAGCCGAATACGACAAGGCCGTCGGGGCTTTGATTCGCAATTACAAGAAGGCAAAAAACATCCAGTACGATGAATTAACCGAAAAGATTGCCGAACCGTTTGGCTTAAACGCCGACGGGATGGACGCCCTGTTGCAAAACGTGGAAGACGCCGGGGTTTCCGTGGTTGACGAAAACGGTGACCCGGACCTGCGGGCACTCAAGGCAACCGAAAAGCTGTCCTCCAAGGCCTTAAAGGATACCACCGCTCCGTCTAGCATTAAGATCAACGATCCGGTGCGGATGTACCTCAAGGAAATCGGCCGGGTCAACCTGCTGACGGCCGACGAAGAAGTGGCGTTGGCCCTGCGGATCGAAAAGGGTGACGAAACCGCTAAGCAAGAACTGGCCGAAGCCAACTTGCGGCTGGTGGTTTCGATTGCTAAGCGTTACGTGGGTCGGGGAATGCAGTTCTTAGACCTAATCCAAGAGGGGAACATGGGGCTGATGAAGGCGGTCGAAAAGTTCGACTACCGTAAGGGCTTCAAGTTCTCCACTTACGCCACCTGGTGGATTCGCCAGGCGATCACCCGGGCGATTGCCGACCAGGCCCGGACGATCCGGATTCCGGTCCACATGGTTGAAACAATCAACAAGTTAATCCGGATCCAACGCCAACTCCTCCAAGACCTCGGCCGGGAACCGCTGCCGGAAGAAATCGGGGCCGAAATGGACATGGACACCCAAAAGGTGCGTGACATCCTGAAGATCTCCCAGGAACCGGTCTCCTTGGAAACGCCGATCGGTGAAGAAGATGACTCCCACTTAGGGGACTTTATCGAAGACCACGACGCCACCAGTCCGGCCGACCACGCCGCTTACGAGATGATGAAAAAGCAGCTCGAAAACGTGCTGGACACCCTGACCGACCGGGAAGAAAACGTCTTACGCCTGCGCTTTGGTTTGGACGACGGCCGGACGCGGACCCTGGAAGAAGTGGGACGCGTCTTTGGCGTGACCCGGGAACGGATCCGGCAAATCGAAGCTAAGGCCCTGCGCAAGTTGCGCCACCCATCCCGTTCCAAGCAGTTAAAGGACTTCTTGGAATAA

Protein sequence:

MAKSSKKNRVISNLEDFNQAEYDKAVGALIRNYKKAKNIQYDELTEKIAEPFGLNADGMDALLQNVEDAGVSVVDENGDPDLRALKATEKLSSKALKDTTAPSSIKINDPVRMYLKEIGRVNLLTADEEVALALRIEKGDETAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMDTQKVRDILKISQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE

GenBank Info

gene - rpoD
locus_tag - FAM19471-i1-1.1_000406
inference - COORDINATES: similar to AA sequence:RefSeq:WP_007123031.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - RNA polymerase sigma factor RpoD
protein_id - extdb:FAM19471-i1-1.1_000406

Gene Locus

Located on scaffold FAM19471-i1-1_scf4


FAM19471-i1-1.1_000405
FAM19471-i1-1.1_000407