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Tools
TAXID 1613
ORGANISM FAM19471
GENOME FAM19471-i1-1.1
GENE FAM19471-i1-1.1_000406
locus tag:
FAM19471-i1-1.1_000406
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
Type
Name
Description
Pathways
Gene Code
rpoD
Gene Product
RNA polymerase sigma factor RpoD
Ortholog
N0.HOG0001104
RNA polymerase sigma factor
KEGG gene
K03086
rpoD; RNA polymerase primary sigma factor
kornec02040
Eggnog Protein
EP:sigA
Eggnog Ortholog
EO:COG0568
Eggnog Description
ED:Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
Occurs in the following pathway maps:
Pathway
Description
kornec02040
Flagellar assembly
Sequences
Nucleotide sequence (GC-content: 55.4 %):
A T G G C A A A G A G C A G T A A G A A G A A C C G G G T A A T T T C G A A C T T A G A A G A T T T C A A C C A A G C C G A A T A C G A C A A G G C C G T C G G G G C T T T G A T T C G C A A T T A C A A G A A G G C A A A A A A C A T C C A G T A C G A T G A A T T A A C C G A A A A G A T T G C C G A A C C G T T T G G C T T A A A C G C C G A C G G G A T G G A C G C C C T G T T G C A A A A C G T G G A A G A C G C C G G G G T T T C C G T G G T T G A C G A A A A C G G T G A C C C G G A C C T G C G G G C A C T C A A G G C A A C C G A A A A G C T G T C C T C C A A G G C C T T A A A G G A T A C C A C C G C T C C G T C T A G C A T T A A G A T C A A C G A T C C G G T G C G G A T G T A C C T C A A G G A A A T C G G C C G G G T C A A C C T G C T G A C G G C C G A C G A A G A A G T G G C G T T G G C C C T G C G G A T C G A A A A G G G T G A C G A A A C C G C T A A G C A A G A A C T G G C C G A A G C C A A C T T G C G G C T G G T G G T T T C G A T T G C T A A G C G T T A C G T G G G T C G G G G A A T G C A G T T C T T A G A C C T A A T C C A A G A G G G G A A C A T G G G G C T G A T G A A G G C G G T C G A A A A G T T C G A C T A C C G T A A G G G C T T C A A G T T C T C C A C T T A C G C C A C C T G G T G G A T T C G C C A G G C G A T C A C C C G G G C G A T T G C C G A C C A G G C C C G G A C G A T C C G G A T T C C G G T C C A C A T G G T T G A A A C A A T C A A C A A G T T A A T C C G G A T C C A A C G C C A A C T C C T C C A A G A C C T C G G C C G G G A A C C G C T G C C G G A A G A A A T C G G G G C C G A A A T G G A C A T G G A C A C C C A A A A G G T G C G T G A C A T C C T G A A G A T C T C C C A G G A A C C G G T C T C C T T G G A A A C G C C G A T C G G T G A A G A A G A T G A C T C C C A C T T A G G G G A C T T T A T C G A A G A C C A C G A C G C C A C C A G T C C G G C C G A C C A C G C C G C T T A C G A G A T G A T G A A A A A G C A G C T C G A A A A C G T G C T G G A C A C C C T G A C C G A C C G G G A A G A A A A C G T C T T A C G C C T G C G C T T T G G T T T G G A C G A C G G C C G G A C G C G G A C C C T G G A A G A A G T G G G A C G C G T C T T T G G C G T G A C C C G G G A A C G G A T C C G G C A A A T C G A A G C T A A G G C C C T G C G C A A G T T G C G C C A C C C A T C C C G T T C C A A G C A G T T A A A G G A C T T C T T G G A A T A A
Protein sequence:
M A K S S K K N R V I S N L E D F N Q A E Y D K A V G A L I R N Y K K A K N I Q Y D E L T E K I A E P F G L N A D G M D A L L Q N V E D A G V S V V D E N G D P D L R A L K A T E K L S S K A L K D T T A P S S I K I N D P V R M Y L K E I G R V N L L T A D E E V A L A L R I E K G D E T A K Q E L A E A N L R L V V S I A K R Y V G R G M Q F L D L I Q E G N M G L M K A V E K F D Y R K G F K F S T Y A T W W I R Q A I T R A I A D Q A R T I R I P V H M V E T I N K L I R I Q R Q L L Q D L G R E P L P E E I G A E M D M D T Q K V R D I L K I S Q E P V S L E T P I G E E D D S H L G D F I E D H D A T S P A D H A A Y E M M K K Q L E N V L D T L T D R E E N V L R L R F G L D D G R T R T L E E V G R V F G V T R E R I R Q I E A K A L R K L R H P S R S K Q L K D F L E
GenBank Info
gene - rpoD
locus_tag - FAM19471-i1-1.1_000406
inference - COORDINATES: similar to AA sequence:RefSeq:WP_007123031.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - RNA polymerase sigma factor RpoD
protein_id - extdb:FAM19471-i1-1.1_000406
Gene Locus
Located on scaffold FAM19471-i1-1_scf4