update range to 10000 bp
locus tag: FAM19471-i1-1.1_000427 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rny
Gene Product
 ribonuclease Y
Ortholog
 N0.HOG0001032 ribonuclease Y
KEGG gene
 K18682 rny; ribonucrease Y [EC:3.1.-.-] kornec03018
Gene Ontology
 GO:0042802 identical protein binding
Gene Ontology
 GO:0005515 protein binding
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rny
Eggnog Ortholog
 EO:COG1418
Eggnog Description
 ED:Endoribonuclease that initiates mRNA decay

Occurs in the following pathway maps:

Pathway Description
kornec03018 RNA degradation

Sequences

Nucleotide sequence (GC-content: 54.5 %):

ATGAATGCAATCAGCTTATTAATCGCCGCTGTCGCTATTGTTGTCGGTCTAATTGCCGGTTACGTGGGTAGGAAAATCGTTTTCGAACAACGATTAACCCAGGCGAAGGAAAACGCCGCGGGGATTATTGCAACTGCCCAAAAGGAGGCGGCGACGGCGAAAAAGGAGGCCATTTTAGAGGCCCGAGAAGAAAGCCATCGCTACCGGGAAGTCGTGGAACAAGAACTCAAGGACCGTCGTAGTGAGGTCCAAAAACAAGAAGAGCGCTTGCTCCAACGCGAAGCAACCCTTGACCGCAAGGACACCAGTCTGGAGAACCGCGAAACTACGATCAGCGCCCGGGAACGGAAGCTCGATCAAAAGACGGAGCAGATTCAAAAGCGTCAACAACAGGCAGCGGATTTAGTCGAGCAGCGCCAAGCCGAGCTCGAAAAGGTCGCCCAGCTATCACACGAAGAGGCCAAAAAACGGCTCCTTTCGCAACTAAAAGAAGAGTTGCAAAGTGAACGGGAAACGATGATTCGGCAAAGCGAACAAGAAGCCGAATTAACGGCGGAAAAGAACGCCAAGGACTTAATCGTGGCCGCAATTCAACGCTCAGCCGCGGATATGGTTCAAGAAACCACCGTGACCGTAGTAACCCTCCCCAATGACGACATGAAGGGGCGGATCATTGGGCGTGAGGGCCGTAACATCCGGACCTTAGAAACCCTGACCGGGATCGACCTGATCATCGATGACACGCCGGAAGCAGTCGTCTTATCCGGGTTTGACCCGGTACGGCGTGAGATTGCCAAGATGGCCCTGGAGCGCTTGATCCAAGACGGCCGGATTCACCCGGCCCGGATTGAGGAGGCGGTTGAACGGGCCCGCAAGGACATGGATACCCAGCTGCGTGAAGTCGGGGAGCAAACGGTCTTTGACCTAGGCCTGCACACCATGCACCCGGACCTGATTAAGACGGTCGGGCGAATGAAGTACCGGACCAGTTATGGTCAAAACGTCTTACAGCACTCAATTGAAGTCGCCAAGTTAGCGGGGATCATGGCCGCTGAGCTCGGTGAAGACGTGACCCTCGCTAAGCGGGCCGGCCTCCTGCACGACATTGGTAAGGCCATCGACCACGAAGTTGATGGTTCCCACGTTGAACTAGGGGTGGAACTAACCCGCAAGTACAAGGAGAACAAGGTCGTTATTAACACGATCGCATCTCACCACGGCGACGTGGCGCCAACCTCGATCATTGCCGTCCTGGTTCAGGCTGCCGATGCCGTTTCCGGGGCCCGTCCTGGTGCCCGTAGTGAGTCGTTGGAACAATATATTCAACGACTCAAGAAGCTAGAGGAGTTGGCCAACCAAAATAGCGGTGTTGATCATTCGTACGCTATCCAGGCTGGCCGCGAGATTCGCGTGATTGTCAAACCAACCAAGGTTTCCGATAAGCAAGCGGTCACCTTGGCCCACGACCTCAAGCAAGAGATTGAAAAGCAACTTGAATACCCAGGGCACATTAAGGTGACGGTAATTCGGGAAACCCGGGCCGTCGATTATGCCAAGTAG

Protein sequence:

MNAISLLIAAVAIVVGLIAGYVGRKIVFEQRLTQAKENAAGIIATAQKEAATAKKEAILEAREESHRYREVVEQELKDRRSEVQKQEERLLQREATLDRKDTSLENRETTISARERKLDQKTEQIQKRQQQAADLVEQRQAELEKVAQLSHEEAKKRLLSQLKEELQSERETMIRQSEQEAELTAEKNAKDLIVAAIQRSAADMVQETTVTVVTLPNDDMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVVLSGFDPVRREIAKMALERLIQDGRIHPARIEEAVERARKDMDTQLREVGEQTVFDLGLHTMHPDLIKTVGRMKYRTSYGQNVLQHSIEVAKLAGIMAAELGEDVTLAKRAGLLHDIGKAIDHEVDGSHVELGVELTRKYKENKVVINTIASHHGDVAPTSIIAVLVQAADAVSGARPGARSESLEQYIQRLKKLEELANQNSGVDHSYAIQAGREIRVIVKPTKVSDKQAVTLAHDLKQEIEKQLEYPGHIKVTVIRETRAVDYAK

GenBank Info

gene - rny
locus_tag - FAM19471-i1-1.1_000427
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012390969.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease Y
protein_id - extdb:FAM19471-i1-1.1_000427

Gene Locus

Located on scaffold FAM19471-i1-1_scf5

FAM19471-i1-1.1_000426
FAM19471-i1-1.1_000428