update range to 10000 bp
locus tag: FAM19471-i1-1.1_000435 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0003424 DEAD/DEAH box helicase
KEGG gene
 K18692 cshB; ATP-dependent RNA helicase CshB [EC:3.6.4.13]
KEGG gene
 K05592 deaD, cshA; ATP-dependent RNA helicase DeaD [EC:3.6.4.13] kornec03018
Gene Ontology
 GO:1901363 heterocyclic compound binding
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:1901265 nucleoside phosphate binding
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0097367 carbohydrate derivative binding
Gene Ontology
 GO:0097159 organic cyclic compound binding
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0070035 obsolete purine NTP-dependent helicase activity
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043590 bacterial nucleoid
Gene Ontology
 GO:0043232 intracellular non-membrane-bounded organelle
Gene Ontology
 GO:0043229 intracellular organelle
Gene Ontology
 GO:0043228 non-membrane-bounded organelle
Gene Ontology
 GO:0043226 organelle
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043168 anion binding
Gene Ontology
 GO:0043167 ion binding
Gene Ontology
 GO:0042623 -
Gene Ontology
 GO:0036094 small molecule binding
Gene Ontology
 GO:0035639 purine ribonucleoside triphosphate binding
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0032559 adenyl ribonucleotide binding
Gene Ontology
 GO:0032555 purine ribonucleotide binding
Gene Ontology
 GO:0032553 ribonucleotide binding
Gene Ontology
 GO:0030554 adenyl nucleotide binding
Gene Ontology
 GO:0017111 ribonucleoside triphosphate phosphatase activity
Gene Ontology
 GO:0017076 purine nucleotide binding
Gene Ontology
 GO:0016887 ATP hydrolysis activity
Gene Ontology
 GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Gene Ontology
 GO:0016817 hydrolase activity, acting on acid anhydrides
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016462 pyrophosphatase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010501 RNA secondary structure unwinding
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009628 response to abiotic stimulus
Gene Ontology
 GO:0009409 response to cold
Gene Ontology
 GO:0009295 nucleoid
Gene Ontology
 GO:0009266 response to temperature stimulus
Gene Ontology
 GO:0008186 ATP-dependent activity, acting on RNA
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008144 obsolete drug binding
Gene Ontology
 GO:0008026 -
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0005524 ATP binding
Gene Ontology
 GO:0005488 binding
Gene Ontology
 GO:0004386 helicase activity
Gene Ontology
 GO:0004004 -
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003724 RNA helicase activity
Gene Ontology
 GO:0003723 RNA binding
Gene Ontology
 GO:0003676 nucleic acid binding
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0000166 nucleotide binding
Eggnog Protein
 EP:cshB
Eggnog Ortholog
 EO:COG0513
Eggnog Description
 ED:DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures
EC Number
 EC:3.6.4.13 RNA helicase; CSFV NS3 helicase; DBP2; DbpA; DDX17; DDX25; DDX3; DDX3X; DDX3Y; DDX4; DDX5; DEAD-box protein DED1; DEAD-box RNA helicase; DEAH-box protein 2; DEAH-box RNA helicase; DED1; Dex(H/D) RNA helicase; EhDEAD1; EhDEAD1 RNA helicase; eIF4A helicase; KOKV helicase; Mtr4p; nonstructural protein 3 helicase; NPH-II; RHA; RNA helicase A; RNA helicase DDX3; RNA helicase Hera; RNA-dependent ATPase; TGBp1 NTPase/helicase domain; VRH1; GRTH/DDX25
Gene Product
 DEAD/DEAH box helicase

Occurs in the following pathway maps:

Pathway Description
kornec03018 RNA degradation

Sequences

Nucleotide sequence (GC-content: 56.2 %):

ATGATTGAATCTTTTGCGGACCTTCACTTGGCCGACTTTTTAACGCCGGCTCTAAAGGACCTTCACTTTGAACGACCAACCGCCGTTCAAGCCCGGGTGATCCCGTTGATCCTCAACGGTAAGAGCGTGGTGGGCCAATCGCGAACCGGGAGTGGGAAGACCCATGCCTTTTTGTTGCCGATCTTTAGCCAACTAGCCCCCAACAACCAGACGGTCCAAGCCGTTATCACCACCCCGTCGCGGGAATTAGCCTACCAAATTTATAACGCCGCCAAGCAACTAAACCGCTTTGCGACCACCCCGTTGACGATTCACAACTACGTCGGTGGGACCGACAAGGAGCACCAAGTCGAACAATTGAACCGGCGCCAACCCCAACTGGTGATTGGGACGCCGGGGCGAATCTTAGACCTGATTAACTCCCAGGCCTTAGATATCCACACGGCTAGCCAGTTCGTGATCGACGAAGCCGATATGACCTTGGACATGGGCTTTTTAGAAACGGTTGACCAAATCGCCGCCCGCTTCCCCGAAAAACTCCAGATGATGGTCTTTTCGGCCACGATTCCCCAAGGGCTACGGCCATTTTTGAAGAAGTACTTGGAAAACCCGGTGATTGAAGAAATTCCCACCGAAACGGTCATCAACCCCAACGTGGAAAACTGGTTGATGTCGACCAAGGGGCGCGACAAAAACGACCTGGTCTACCGCCTGTTGACCCTAGGGGACCCGTACTTGGCCCTGGTCTTTGCCAACACCCGTGACCGGGCGACAGAACTGGCTAACTACTTGCAAGAACGGGGCTTAAAGGTCGCCCTGATTCACGGGGGACTGGAACCACGGGCCCGCAAGCGGACGATGCGCCAAATCCGGGACATGGACTACCAATACATCGTGGCGACGGACTTAGCCGCCCGGGGGATTGACCTGGAGGGGGTTTCCTTAGTCTTAAACGATGACATTCCAAGTGACCTGGAATACTTCATTCACCGGGTCGGCCGGACGGGTCGGGCGAACATGGCCGGGACCGCCATCACCCTGTACGCGCCCGCCGAAGACGTCCTGATTGAAAAGTTAGAGGAACGGGGCATCACCTTTATTCCAAAGGACTTGAAAAACGGCCGGATCGTCACGACTTACGACCGGAACCGCCGCAAGGCCCACCGCCGTAAGAAGGCGGCCTTAGACCCGACCGTTAAGGGCTTTGTCAAGAAGGCCAAGAAAAAGGTCAAGCCGGGCTACAAGCGCCGCATCAAGCAGCGGATTAAAGAAGACGAGCGCCAAAAGGTTAAGCAGGCCCAGCGCCACGAAATGCGCAAGGCGAAGCGGGCTCGGCAAAAACAACACCGGGCGGAGCGGGCTCGTCAACAGAATGGGCGTTGA

Protein sequence:

MIESFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPIFSQLAPNNQTVQAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLVYRLLTLGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYIVATDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVLIEKLEERGITFIPKDLKNGRIVTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGYKRRIKQRIKEDERQKVKQAQRHEMRKAKRARQKQHRAERARQQNGR

GenBank Info

locus_tag - FAM19471-i1-1.1_000435
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003686032.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - DEAD/DEAH box helicase
protein_id - extdb:FAM19471-i1-1.1_000435

Gene Locus

Located on scaffold FAM19471-i1-1_scf5

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0187: GO:0009295 nucleoid
FAM19471-i1-1.1_000434
FAM19471-i1-1.1_000436