update range to 10000 bp
locus tag: FAM19471-i1-1.1_000438 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 ruvX
Ortholog
 N0.HOG0001196 Holliday junction resolvase RuvX
KEGG gene
 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
Gene Product
 Holliday junction resolvase RuvX
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044085 cellular component biogenesis
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042254 ribosome biogenesis
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034471 ncRNA 5'-end processing
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
 GO:0016072 rRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006364 rRNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0000967 rRNA 5'-end processing
Gene Ontology
 GO:0000966 RNA 5'-end processing
Eggnog Protein
 EP:yrrK
Eggnog Ortholog
 EO:COG0816
Eggnog Description
 ED:Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA

Sequences

Nucleotide sequence (GC-content: 54.6 %):

ATGCGCTTATTAGGATTAGACGTTGGCTCCAAGACGGTGGGGGTGGCGGAAAGCGATCCCTTGGGCTGGACGGCCCAAGCCGTGGAAATCATCCCCATTGATGAGGAAGCGGAGGTCTTTGGCTTAGAGCGGGTGGCGGAACTGGTTAAATCCCGTCAGGTCGCTGGCTTTGTGCTCGGCCTACCCAAGAACATGAATAACACGGAGGGACCACGGGTTGAAGCGGCACGCCATTACGGTGAGCTCTTGGAGGAGCGGTTTGGTTTGCCAATCGACTATCAAGATGAGCGCTTAACCACGGTCCAAGCCCACCGGATGTTAGTCGAAGAGGCTGACGTTTCCCGGCGCAAACAAAAAAAGGTGATCGACGAATTGGCGGCCACCTTAATCTTACAGAATTACTTGGATCGCCACGGTAAGTTGTGCGCCAAGCTATAG

Protein sequence:

MRLLGLDVGSKTVGVAESDPLGWTAQAVEIIPIDEEAEVFGLERVAELVKSRQVAGFVLGLPKNMNNTEGPRVEAARHYGELLEERFGLPIDYQDERLTTVQAHRMLVEEADVSRRKQKKVIDELAATLILQNYLDRHGKLCAKL

GenBank Info

gene - ruvX
locus_tag - FAM19471-i1-1.1_000438
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003682831.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - Holliday junction resolvase RuvX
protein_id - extdb:FAM19471-i1-1.1_000438

Gene Locus

Located on scaffold FAM19471-i1-1_scf5

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_000437
FAM19471-i1-1.1_000439