update range to 10000 bp
locus tag: FAM19471-i1-1.1_000440 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 ribonuclease HIII
Ortholog
 N0.HOG0004375 ribonuclease HIII
KEGG gene
 K03471 rnhC; ribonuclease HIII [EC:3.1.26.4] kornec03030
Gene Ontology
 GO:1901576 organic substance biosynthetic process
Gene Ontology
 GO:1901575 organic substance catabolic process
Gene Ontology
 GO:1901361 organic cyclic compound catabolic process
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
Gene Ontology
 GO:0090501 RNA phosphodiester bond hydrolysis
Gene Ontology
 GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0046700 heterocycle catabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044270 cellular nitrogen compound catabolic process
Gene Ontology
 GO:0044265 cellular macromolecule catabolic process
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044249 cellular biosynthetic process
Gene Ontology
 GO:0044248 cellular catabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0043137 DNA replication, removal of RNA primer
Gene Ontology
 GO:0034655 nucleobase-containing compound catabolic process
Gene Ontology
 GO:0034645 cellular macromolecule biosynthetic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0033567 DNA replication, Okazaki fragment processing
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0032991 protein-containing complex
Gene Ontology
 GO:0032299 ribonuclease H2 complex
Gene Ontology
 GO:0022616 DNA strand elongation
Gene Ontology
 GO:0019439 aromatic compound catabolic process
Gene Ontology
 GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
Gene Ontology
 GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters
Gene Ontology
 GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009059 macromolecule biosynthetic process
Gene Ontology
 GO:0009058 biosynthetic process
Gene Ontology
 GO:0009057 macromolecule catabolic process
Gene Ontology
 GO:0009056 catabolic process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006974 cellular response to DNA damage stimulus
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006401 RNA catabolic process
Gene Ontology
 GO:0006298 mismatch repair
Gene Ontology
 GO:0006281 DNA repair
Gene Ontology
 GO:0006273 lagging strand elongation
Gene Ontology
 GO:0006271 DNA strand elongation involved in DNA replication
Gene Ontology
 GO:0006261 DNA-templated DNA replication
Gene Ontology
 GO:0006260 DNA replication
Gene Ontology
 GO:0006259 DNA metabolic process
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0004540 ribonuclease activity
Gene Ontology
 GO:0004523 RNA-DNA hybrid ribonuclease activity
Gene Ontology
 GO:0004521 endoribonuclease activity
Gene Ontology
 GO:0004519 endonuclease activity
Gene Ontology
 GO:0004518 nuclease activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rnhC
Eggnog Ortholog
 EO:COG1039
Eggnog Description
 ED:Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
EC Number
 EC:3.1.26.4 ribonuclease H; endoribonuclease H (calf thymus); RNase H; RNA*DNA hybrid ribonucleotidohydrolase; hybrid ribonuclease; hybridase; hybridase (ribonuclease H); ribonuclease H; hybrid nuclease; calf thymus ribonuclease H

Occurs in the following pathway maps:

Pathway Description
kornec03030 DNA replication

Sequences

Nucleotide sequence (GC-content: 58.2 %):

ATGAACATCGTAATTAACGTTGATACACCGACCTTTGAACAGATGAAGTCAACCTACCAGGCCCCGGGAACCCTCCCGGCCGGGGCGTCCTTTCACGCCAAGCTAAAGGGGGTCACCGTGACCGGCTACACCAAGAGCCACAAGGTGATGTTTCAGGGCGCCCTTGCCAACCAAGAGGCCGCCCGGTGGCAACCAAACGACGCCCCAGCCCCCTCGCGTTCGACACCTGCCCCGGCTGGCTTACCCGCCGGTTTTGCCACCTGGTCGGTCTTGGGGTCCGATGAGGTCGGGGTGGGCTCTTACTTTGGCCCCCTCACCACGGCGGCCGTCTTTGTCGCCGCCGACCAAGTCGCTTCCCTCACCCAGCTGGGCGTCGCCGATTCCAAAAAACTAACCGACCCGGAAATCATTCGCTTGGCCAAACAGATCATGGCAACTTGCCCGGTCACCTACCTCAACTTGATGCCCGCGGCCTATAACGCCCGCATGAAAAAGTATAACCAGGCCCAGTTAAAGGCCCTGTGCCACAACTACGTTCTCGCTAAGACGTTAGAACGGTTAGCCACCAAGCCGCAGGCCATCTTGATTGACCAGTTCGTCAGTGAACGGACCTACTTTAATTATTTGCAGGGCCAACCACAGATTGTTAGCCACCACGTTTATTTTCAAACCAAGGGGGAACAAGCTCACGTGGCGGTGGCAGCGGCCTCGATCGTCGCCCGCTACCAATCGTTGAAGGCAATGGATACCCTGTCTGAACAAGCCGGCATCACCCTGCCAATTGGGGCCGGTCACGCCGTCGACTTAATCGCCGCCAAGCTAATCCGCAAGGGCCTCGACCTCAACCAGTTTGCCAAGGTCCACTTCGCTAACACCCAAAAGGCCCGCCAGCTGGCTCGCCAATAA

Protein sequence:

MNIVINVDTPTFEQMKSTYQAPGTLPAGASFHAKLKGVTVTGYTKSHKVMFQGALANQEAARWQPNDAPAPSRSTPAPAGLPAGFATWSVLGSDEVGVGSYFGPLTTAAVFVAADQVASLTQLGVADSKKLTDPEIIRLAKQIMATCPVTYLNLMPAAYNARMKKYNQAQLKALCHNYVLAKTLERLATKPQAILIDQFVSERTYFNYLQGQPQIVSHHVYFQTKGEQAHVAVAAASIVARYQSLKAMDTLSEQAGITLPIGAGHAVDLIAAKLIRKGLDLNQFAKVHFANTQKARQLARQ

GenBank Info

locus_tag - FAM19471-i1-1.1_000440
EC_number - 3.1.26.4
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003682837.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease HIII
protein_id - extdb:FAM19471-i1-1.1_000440

Gene Locus

Located on scaffold FAM19471-i1-1_scf5

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
FAM19471-i1-1.1_000439
FAM19471-i1-1.1_000441