update range to 10000 bp
locus tag: FAM19471-i1-1.1_000450 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Ortholog
 N0.HOG0001142 mechanosensitive ion channel
Gene Product
 mechanosensitive ion channel family protein
KEGG gene
 K22044 ybiO; moderate conductance mechanosensitive channel
KEGG gene
 K16052 ynaI, mscMJ; MscS family membrane protein
Gene Ontology
 GO:0104004 cellular response to environmental stimulus
Gene Ontology
 GO:0071470 cellular response to osmotic stress
Gene Ontology
 GO:0071214 cellular response to abiotic stimulus
Gene Ontology
 GO:0055085 transmembrane transport
Gene Ontology
 GO:0051716 cellular response to stimulus
Gene Ontology
 GO:0051234 establishment of localization
Gene Ontology
 GO:0051179 localization
Gene Ontology
 GO:0050896 response to stimulus
Gene Ontology
 GO:0033554 cellular response to stress
Gene Ontology
 GO:0022857 transmembrane transporter activity
Gene Ontology
 GO:0022836 gated channel activity
Gene Ontology
 GO:0022803 passive transmembrane transporter activity
Gene Ontology
 GO:0015267 channel activity
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009628 response to abiotic stimulus
Gene Ontology
 GO:0008381 mechanosensitive ion channel activity
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006970 response to osmotic stress
Gene Ontology
 GO:0006950 response to stress
Gene Ontology
 GO:0006810 transport
Gene Ontology
 GO:0005215 transporter activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:ykuT
Eggnog Ortholog
 EO:COG0668
Eggnog Description
 ED:mechanosensitive ion channel

Sequences

Nucleotide sequence (GC-content: 55.5 %):

ATGGAACTACTTGCCTCCACCTCGCTGACCAACCAGGCCAGCCAAATCAGCCATTACTTCTCCACCCTTAATTGGGATGCGATCGTCAAAAATCTGGGTGATCGGATCTTGTCCATTCTCCTCGCCTTTGTCATCTTTGGCGCCATCCTCTGGGTTGGAAAACTAATCATTGACGCCGCCTTTCACCAGACCAGGCGCATCCAGGTGCTGGGCGGAACGCACCGGGCGGCTACCTTTCACGCCTTAACCCTCAACATCTTTCGCTACACCTGTTACTTTTTCTTACTCTACGCCCTCTTATCTTTAATTGGGGTTCCCGTGGGCACTCTGTTGGCCGGGGCCGGAATCTTCTCCATTGCCCTGGGGCTTGGGGCCCAGGGGTTTGTTTCCGACGTGGTTAACGGTTTTTTCATCCTCTTGGAACAACAGATTGACGTTGGCGACGTGGTTCAAATTGGCACCACCAAGGGAACCGTGGCCGCCATTGGGTTACGGACCACCCAGGTTCTCTCCACAGACGGGACTCTGACCTACATTCAAAACCGCAACATCACCATGGTACAAAACTTCTCCCGCCACAATCTGACCGCCAACGTCGACATCCAAATCACGCCGACGACCCCGCTCGACCAGGTGGAGGCGATCGTTAAAAAGGCCGGCCCAAGCCTGCTAAAGGAGGTCGACGGCTTAATTAAAGAACCCGACGTCACCGGGCCAACCACCGATCAAATGGGACGGCTGGTCTTCCGGGTGGTCATCACCACCCGTTCCGGCACCCAGGGTAGCGCGGCGGCCACCTGCTTAGCCACCTACCTAAAGGATTTAAATGACGCTGAAGTTCCTCTAGGCAACGAATGGGGGCACCCGCATGGCCACTAA

Protein sequence:

MELLASTSLTNQASQISHYFSTLNWDAIVKNLGDRILSILLAFVIFGAILWVGKLIIDAAFHQTRRIQVLGGTHRAATFHALTLNIFRYTCYFFLLYALLSLIGVPVGTLLAGAGIFSIALGLGAQGFVSDVVNGFFILLEQQIDVGDVVQIGTTKGTVAAIGLRTTQVLSTDGTLTYIQNRNITMVQNFSRHNLTANVDIQITPTTPLDQVEAIVKKAGPSLLKEVDGLIKEPDVTGPTTDQMGRLVFRVVITTRSGTQGSAAATCLATYLKDLNDAEVPLGNEWGHPHGH

GenBank Info

locus_tag - FAM19471-i1-1.1_000450
inference - COORDINATES: similar to AA sequence:RefSeq:WP_014562245.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - mechanosensitive ion channel family protein
protein_id - extdb:FAM19471-i1-1.1_000450

Gene Locus

Located on scaffold FAM19471-i1-1_scf5

FAM19471-i1-1.1_000449
FAM19471-i1-1.1_000451