update range to 10000 bp
locus tag: FAM19471-i1-1.1_000456 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 YebC/PmpR family DNA-binding transcriptional regulator
Ortholog
 N0.HOG0001078 YebC/PmpR family DNA-binding transcriptional regulator
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Eggnog Protein
 EP:yebC
Eggnog Ortholog
 EO:COG0217
Eggnog Description
 ED:Transcriptional regulatory protein

Sequences

Nucleotide sequence (GC-content: 52.3 %):

ATGTCAGGACATTCAAAATGGCATAACATCCAAGGGCGTAAGAACGCTCAGGATGCCAAGCGTGGTAAAATTTTCCAAAAGATTTCACGTGACTTGTACCAAGCCGCTAAAGCAGGTGACCCGGATCCCGACAACAACCCTCAACTCCGGTTGGTAATGGATAAGGCGCGGGCAGCTAACATGCCTAAGCAAAACATCCAACGGGCCATTGACAAGGCCACTGGTGCTGGTGGGGCCAACTTCGAAGAAATCACTTACGAAGGTTACGGTCCTGGTGGGGTAGCCGTAATGGTCTTCTGCCTGACCGACAACAAGAACCGGACGGCCGCCGCTATCCGGTCCGCCTTCACTCACTCCGGTGGTTCCTTAGGGGCCACGGGTTCCGTTTCCTACATGTTCAACCGGCAAGGGTTAATTGAAATCCTTCGTGACGGCTTGGACAAGGACGAAGACGACATGTTGATGGACGCACTTGACGCTGGGGCTGACGACATGCAAGCCACTGACGACAAGTTCCAAATCTTCACGGATCCTTCCGCCATGACTTCCGTTCGTGACGCCTTACAAGAACAAGGCTACGAACTGGAAACGGCCGAAGTAACCATGATCCCAGAAAACAAGACCAAGGTTCCTGCCGACAAGGTTGGTCAATACCAACACTTGATCGATGAATTGGAAGACAACGATGACGTGGCTGACGTTTACGAAGCAGCCTTCGTTGAAGATGCCGACCAGGGCGAATAA

Protein sequence:

MSGHSKWHNIQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPDNNPQLRLVMDKARAANMPKQNIQRAIDKATGAGGANFEEITYEGYGPGGVAVMVFCLTDNKNRTAAAIRSAFTHSGGSLGATGSVSYMFNRQGLIEILRDGLDKDEDDMLMDALDAGADDMQATDDKFQIFTDPSAMTSVRDALQEQGYELETAEVTMIPENKTKVPADKVGQYQHLIDELEDNDDVADVYEAAFVEDADQGE

GenBank Info

locus_tag - FAM19471-i1-1.1_000456
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003686056.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - YebC/PmpR family DNA-binding transcriptional regulator
protein_id - extdb:FAM19471-i1-1.1_000456

Gene Locus

Located on scaffold FAM19471-i1-1_scf5

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_000455
FAM19471-i1-1.1_000457