update range to 10000 bp
locus tag: FAM19471-i1-1.1_000476 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
KEGG reaction
 R01648 4-aminobutanoate:2-oxoglutarate aminotransferase; 4-Aminobutanoate + 2-Oxoglutarate <=> Succinate semialdehyde + L-Glutamate kornec00250kornec00650kornec01100kornec01120
KEGG reaction
 R00908 beta-alanine:2-oxoglutarate aminotransferase; beta-Alanine + 2-Oxoglutarate <=> 3-Oxopropanoate + L-Glutamate kornec00410kornec00640kornec01100
Ortholog
 N0.HOG0001865 aspartate aminotransferase family protein
KEGG gene
 K20708 E5.1.1.21; isoleucine 2-epimerase [EC:5.1.1.21]
KEGG gene
 K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] kornec00250kornec00410kornec00640kornec00650kornec01100kornec01120
Eggnog Protein
 EP:gabT
Eggnog Ortholog
 EO:COG0160
Eggnog Description
 ED:Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
EC Number
 EC:5.1.1.21 isoleucine 2-epimerase; BCAA racemase
EC Number
 EC:2.6.1.19 4-aminobutyrate---2-oxoglutarate transaminase; beta-alanine-oxoglutarate transaminase; aminobutyrate aminotransferase (ambiguous); beta-alanine aminotransferase; beta-alanine-oxoglutarate aminotransferase; gamma-aminobutyrate aminotransaminase (ambiguous); gamma-aminobutyrate transaminase (ambiguous); gamma-aminobutyrate-alpha-ketoglutarate aminotransferase; gamma-aminobutyrate-alpha-ketoglutarate transaminase; gamma-aminobutyrate:alpha-oxoglutarate aminotransferase; gamma-aminobutyric acid aminotransferase (ambiguous); gamma-aminobutyric acid transaminase (ambiguous); gamma-aminobutyric acid-alpha-ketoglutarate transaminase; gamma-aminobutyric acid-alpha-ketoglutaric acid aminotransferase; gamma-aminobutyric acid-2-oxoglutarate transaminase; gamma-aminobutyric transaminase (ambiguous); 4-aminobutyrate aminotransferase (ambiguous); 4-aminobutyrate-2-ketoglutarate aminotransferase; 4-aminobutyrate-2-oxoglutarate aminotransferase; 4-aminobutyrate-2-oxoglutarate transaminase; 4-aminobutyric acid 2-ketoglutaric acid aminotransferase; 4-aminobutyric acid aminotransferase (ambiguous); aminobutyrate transaminase (ambiguous); GABA aminotransferase (ambiguous); GABA transaminase (ambiguous); GABA transferase (ambiguous); GABA-alpha-ketoglutarate aminotransferase; GABA-alpha-ketoglutarate transaminase; GABA-alpha-ketoglutaric acid transaminase; GABA-alpha-oxoglutarate aminotransferase; GABA-2-oxoglutarate aminotransferase; GABA-2-oxoglutarate transaminase; GABA-oxoglutarate aminotransferase; GABA-oxoglutarate transaminase; glutamate-succinic semialdehyde transaminase; GabT kornec00250kornec00410kornec00640kornec00650kornec01100kornec01120
Gene Product
 aspartate aminotransferase family protein

Occurs in the following pathway maps:

Pathway Description
kornec00250 Alanine, aspartate and glutamate metabolism
kornec00410 beta-Alanine metabolism
kornec00640 Propanoate metabolism
kornec00650 Butanoate metabolism
kornec01100 Metabolic pathways
kornec01120 Microbial metabolism in diverse environments

Sequences

Nucleotide sequence (GC-content: 59.1 %):

ATGGAGGAGAAAAAAAGTAACCAGCAGATGCTCGCTGCCGAAGAAGAGGCCTTTTCCTCGGCGGCCCGAATTAAGTATTATGACATTGTGATTGATAAAGGGCGGGGCGCCATTATTACCGACGTGGAAGGCCACGACTACATTGACCTCTTGGCCAGTGCTAGCTCTACCAATACCGGCCACGCCCACCCCAAGGTCGTCAAGGCCATCGCCGACCAGGCGGCCAGGCTGATCCAATACACCCCCGCTTACTTTGCGAACTCCCAGGCCGCCCGCTTAGCCCCGCGCCTGGCGGCGTTGGCACCGATCAGCGGGCCGGTAGAGGTCGCCTGGGGTAACTCGGGGTCCGACGCCAACGACGCGATCATTAAGTTTGCCCGCGCCGCCACCGGGCGCCAATACATCGTTTCCTTCACCGGGGCCTATCACGGCTCCACGTACGGCTCGATGACGATCTCAAGCGTCACCTTAAACATGAGCCGTAAGATGGGCCCGCTCTTGCCCGGCGTGGTGAAGGTGCCCTTCCCGAGCCCGTGGGACAAGTTAGCCGGTGAAAGCGACGACCAGTTTGTCGACCGGATGTACAAGGCCTTTTTGCAACCCTTTGAAACCTACCTGCCGGCCGAAGAAGTCGCGGCGATCGTGATTGAACCAATCCAGGGGGACGGCGGGATCATCAAGGTTCCCCAGGCCTACATGGAAAGGATCTATGCCTTTGCCAAGCAAAACGGGATCCTCTTTGCCATTGACGAGGTCAACCAGGGGATGGGGCGGACCGGAAAGTGGTGGTCAATTCAACACTTCCCGGGCATCGAACCGGACCTGATGTCGGTTGGTAAGTCGCTGGCCTCGGGGATGCCACTGAGCGCCGTGGTCGGCAGAAAAGAGATCATGGAAGCGCTCGGCCCGGCGGCCAATGTCTACACGACCGCCGGTAACCCGGTGACGGCCGCCGCCGCCAACGCCACCCTCGACGTGATCGAAGAAGAACACCTGGTGGAACGCTCGGCGAAGCTAGGGCAAAAGGCCAAGGACTTCTTTGACCAGGAACAAGCCAAGTACGACTTCGTTGGCGACGCCCGCTTGTACGGGCTCAACGGTGGGATTAGCATCGTCGACCCGGCCACTGGTAAGGGCGACGTTGAAGCCACCACCAAGCTGATGTACCGGATCTTTGAACTCGGGGCGATTATCATTAGCCTGCGCGGGAACATCCTCCGTTTCCAACCGCCGCTGGTTATCACCGAAGAACAATTAGACAAAGCCTTTGCCATCATCGACCAGGCCTTTGCCGAACTGGCCGCTGGCAAACTAAGCCTCCCCTCCAACGCAGAAGAGCTGGGTTGGGAATAA

Protein sequence:

MEEKKSNQQMLAAEEEAFSSAARIKYYDIVIDKGRGAIITDVEGHDYIDLLASASSTNTGHAHPKVVKAIADQAARLIQYTPAYFANSQAARLAPRLAALAPISGPVEVAWGNSGSDANDAIIKFARAATGRQYIVSFTGAYHGSTYGSMTISSVTLNMSRKMGPLLPGVVKVPFPSPWDKLAGESDDQFVDRMYKAFLQPFETYLPAEEVAAIVIEPIQGDGGIIKVPQAYMERIYAFAKQNGILFAIDEVNQGMGRTGKWWSIQHFPGIEPDLMSVGKSLASGMPLSAVVGRKEIMEALGPAANVYTTAGNPVTAAAANATLDVIEEEHLVERSAKLGQKAKDFFDQEQAKYDFVGDARLYGLNGGISIVDPATGKGDVEATTKLMYRIFELGAIIISLRGNILRFQPPLVITEEQLDKAFAIIDQAFAELAAGKLSLPSNAEELGWE

GenBank Info

locus_tag - FAM19471-i1-1.1_000476
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391664.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - aspartate aminotransferase family protein
protein_id - extdb:FAM19471-i1-1.1_000476

Gene Locus

Located on scaffold FAM19471-i1-1_scf6

FAM19471-i1-1.1_000475
FAM19471-i1-1.1_000477