update range to 10000 bp
locus tag: FAM19471-i1-1.1_000557 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 RluA family pseudouridine synthase
Ortholog
 N0.HOG0000481 RluA family pseudouridine synthase
KEGG gene
 K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044444 obsolete cytoplasmic part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044085 cellular component biogenesis
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042254 ribosome biogenesis
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0031118 rRNA pseudouridine synthesis
Gene Ontology
 GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
 GO:0016866 intramolecular transferase activity
Gene Ontology
 GO:0016853 isomerase activity
Gene Ontology
 GO:0016072 rRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009982 pseudouridine synthase activity
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006364 rRNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005829 cytosol
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0001522 pseudouridine synthesis
Gene Ontology
 GO:0000455 enzyme-directed rRNA pseudouridine synthesis
Gene Ontology
 GO:0000154 rRNA modification
Eggnog Protein
 EP:yjbO
Eggnog Ortholog
 EO:COG0564
Eggnog Description
 ED:Responsible for synthesis of pseudouridine from uracil
EC Number
 EC:5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase; RluD; pseudouridine synthase RluD

Sequences

Nucleotide sequence (GC-content: 54.1 %):

ATGGAATTTAAGTGGCACTACTTGGGCGAGCAACCACGTCGGTTACGGTCGGTCTTTCGCTCCTTTGGGGTGACTAATTCGCTACTTAAGGTGGCCATCTTCCATGGCGGTCAGATGAGGATCAATGATCGGGTGGCGTGGGCCATTGACCAAGTTGAGCCCGGCGACGTGGTTTATTTAGTGGTTCCTAATGAGCCGGCTAATCCCACCATCACGGTCAGTGACCAAACCTTTGAAATCGCTTATGAGGATGAAGACTTTTTGGTGATTAATAAGGAGGCCGGCGTGGCCACCGTTCCTGCCCATCACGTCGCCGTCCAAGACAGCCTGGTCAACCGGGTCAAGGGGTATTACCAACGGCAAAATTACCCCAATCAAGTGACCCACGTGGCAACCCGCTTGGATAAGGATACGTCGGGGCTAGTGGTTTTTCCAAAGCACCGCTTCGCCCACGCAGTCTTAGACCGCCAACTGAAGGCCCGCCAAGTCAAAAAAGAGTACTTGGCAATGGTGCAGGGGAGGTTAACCGTAAGTCATGGTTACATCGACGCCCCGATCCGCCGGGATCCGGACTCCTTCGTGAAACGGTTGGTGGCTCCGGATGGCAAGGCATCGGCAACCGAATACTGGTGTGAACGGGTGACAGATACGACTAGTTTGGTACGAGTCCGCTTACACACGGGCCGGACCCACCAGATTCGGGTCCACTTTTCCTTTTTGGGCCATCCCCTATTGGGAGACGATATGTACGGGACTGGCTTTGGGATGCCCCGTCAAGCCTTGCATTGTCAACGGGTTAGTTTTTACTCTCCCTTTAAGCAGAAGGTAATTTCCGTCGCCGCCCCACTGCCCACGGACTTTCAGCGGGCTGAGGATGAGTGGTTAAACTAA

Protein sequence:

MEFKWHYLGEQPRRLRSVFRSFGVTNSLLKVAIFHGGQMRINDRVAWAIDQVEPGDVVYLVVPNEPANPTITVSDQTFEIAYEDEDFLVINKEAGVATVPAHHVAVQDSLVNRVKGYYQRQNYPNQVTHVATRLDKDTSGLVVFPKHRFAHAVLDRQLKARQVKKEYLAMVQGRLTVSHGYIDAPIRRDPDSFVKRLVAPDGKASATEYWCERVTDTTSLVRVRLHTGRTHQIRVHFSFLGHPLLGDDMYGTGFGMPRQALHCQRVSFYSPFKQKVISVAAPLPTDFQRAEDEWLN

GenBank Info

locus_tag - FAM19471-i1-1.1_000557
inference - COORDINATES: similar to AA sequence:RefSeq:WP_015638726.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - RluA family pseudouridine synthase
protein_id - extdb:FAM19471-i1-1.1_000557

Gene Locus

Located on scaffold FAM19471-i1-1_scf7

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
SL-0091: GO:0005829 cytosol
FAM19471-i1-1.1_000556
FAM19471-i1-1.1_000558