update range to 10000 bp
locus tag: FAM19471-i1-1.1_000560 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 tRNA (cytidine(34)-2'-O)-methyltransferase
Ortholog
 N0.HOG0003476 tRNA (cytidine(34)-2'-O)-methyltransferase
KEGG gene
 K03216 trmL, cspR; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
Eggnog Protein
 EP:cspR
Eggnog Ortholog
 EO:COG0219
Eggnog Description
 ED:Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily
EC Number
 EC:2.1.1.207 tRNA (cytidine34-2'-O)-methyltransferase; yibK (gene name); methyltransferase yibK; TrmL; tRNA methyltransferase L; tRNA (cytidine34/5-carboxymethylaminomethyluridine34-2'-O)-methyltransferase

Sequences

Nucleotide sequence (GC-content: 49.3 %):

ATGACAAATCACATTGTATTATTTGAGCCCCTTTTTCCAGCTAACACCGGTAATATTGCTAGAACCTGTGCTGGGACTGATACCGTCTTACACCTCATTAAGCCGCTGGGCTTTTCGACCGATGATAAACATATGAAGCGGGCCGGCCTGGATTACTGGGACAAGGTGAAGGTGGTTTACCACGATGACCTAGTGGCCTTTTTGGATTCAATTGACCTAGACCACCTCTACATCGTCTCTAAGTTTGCCGAACGCGATTATAGTGAGGTGGACTACACCATCGCCGGGGACCACTACTTCTTGTTCGGTAAGGAAACGACCGGGTTGCCAGAGGGTTTCATGCGCCGTTATCCTGAAAAAGCAATCCGAATTCCTCAAGATGACAACAACATCCGGGCGCTCAACCTGTCCAATACCGCGGCAATTGTGATTTATGAGGCCCTGCGCCAACAAGGCTTCCCGAACCTCGCCCGGGTGCACAAGTACCCATTTGATAAGTTAAAGTAG

Protein sequence:

MTNHIVLFEPLFPANTGNIARTCAGTDTVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVYHDDLVAFLDSIDLDHLYIVSKFAERDYSEVDYTIAGDHYFLFGKETTGLPEGFMRRYPEKAIRIPQDDNNIRALNLSNTAAIVIYEALRQQGFPNLARVHKYPFDKLK

GenBank Info

locus_tag - FAM19471-i1-1.1_000560
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003674441.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - tRNA (cytidine(34)-2'-O)-methyltransferase
protein_id - extdb:FAM19471-i1-1.1_000560

Gene Locus

Located on scaffold FAM19471-i1-1_scf7

FAM19471-i1-1.1_000559
FAM19471-i1-1.1_000561