update range to 10000 bp
locus tag: FAM19471-i1-1.1_000565 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rsmH
Ortholog
 N0.HOG0001270 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
KEGG gene
 K03438 mraW, rsmH; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140102 catalytic activity, acting on a rRNA
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071840 cellular component organization or biogenesis
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0071424 rRNA (cytosine-N4-)-methyltransferase activity
Gene Ontology
 GO:0070475 rRNA base methylation
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044464 obsolete cell part
Gene Ontology
 GO:0044424 obsolete intracellular part
Gene Ontology
 GO:0044260 cellular macromolecule metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0044085 cellular component biogenesis
Gene Ontology
 GO:0043414 macromolecule methylation
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042254 ribosome biogenesis
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0032259 methylation
Gene Ontology
 GO:0031167 rRNA methylation
Gene Ontology
 GO:0022613 ribonucleoprotein complex biogenesis
Gene Ontology
 GO:0016741 transferase activity, transferring one-carbon groups
Gene Ontology
 GO:0016740 transferase activity
Gene Ontology
 GO:0016434 rRNA (cytosine) methyltransferase activity
Gene Ontology
 GO:0016072 rRNA metabolic process
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
Gene Ontology
 GO:0008649 rRNA methyltransferase activity
Gene Ontology
 GO:0008173 RNA methyltransferase activity
Gene Ontology
 GO:0008170 N-methyltransferase activity
Gene Ontology
 GO:0008168 methyltransferase activity
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006364 rRNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0005737 cytoplasm
Gene Ontology
 GO:0005623 obsolete cell
Gene Ontology
 GO:0005622 intracellular anatomical structure
Gene Ontology
 GO:0005575 cellular_component
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Gene Ontology
 GO:0001510 RNA methylation
Gene Ontology
 GO:0000154 rRNA modification
Eggnog Protein
 EP:rsmH
Eggnog Ortholog
 EO:COG0275
Eggnog Description
 ED:Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
EC Number
 EC:2.1.1.199 16S rRNA (cytosine1402-N4)-methyltransferase; RsmH; MraW
Gene Product
 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH

Sequences

Nucleotide sequence (GC-content: 52.7 %):

ATGGCAGAATTTAACCACGTAACCGTGCTACTTCACGAAGCGGTGGCGGGGCTTGCCATTCAGCCAGCGGGTGTCTACGTTGACGCCACGCTAGGTGGTGGTGGTCACAGTGGCGAGATCTTAAAACAACTCACCAGTGGTCACCTGTACTCCTTTGACCAGGATGAAACGGCGATCCACTATAACCAAGCTAACTTAGGCCCGGCGATTGAAGAGGGAAAACTAACCTTAATGCAGACCAATTTCCGGAACTTAAAGCAGGCCCTAGCTGATCAGGGAGTCACAGCAATTGACGGGATCGTTTACGACCTTGGGGTATCATCACCCCAATTCGATGATGCCAAGCGGGGCTTTTCCTATCAACACGATGCCCCATTGGATATGCGGATGAACCAAGACCAGCCCTTATCGGCTTACCAGGTCGTTAACGAATGGTCATACCAAGAACTAGTCCGGATCCTCTACCGCTACGGGGAAGAGAAGTTTGCCAAGCAAATTGCCCGGGCCATTGAACGGGCGCGCCAAAAGCAACCGATCCAAACGACGATGGAGCTAGCCAACATCGTTAAGGAGGCGATCCCCGCCGCGGCTCGTCGCCACGGGGGGCATCCGGCTAAGAAGAGTTTTCAGGCAATTCGGATCGCCGTCAACGACGAGCTAGGGGCGCTGGAGGATTCTTTAGAACAGGCCCTGGCGCTCTTAAAAGTTGGTGGTCGGATTTCCGTGATCACCTTCCAGTCCTTAGAGGACCGCTTGGTGAAAACAATGTTTAAAGAGGCAACTAGTTTACCGGACTTACCGCCGGGCCTGCCGGTTATTCCAGCGGACGCCCAGCCCGACTTTAAATTGATCAACAAAAAACCAGTGCTCCCAACCGAAGACGAATTGAAGGTTAACCACCGGGCGCACAGTGCTAAACTTCGCGTGATTGAAAGACTTAAATAA

Protein sequence:

MAEFNHVTVLLHEAVAGLAIQPAGVYVDATLGGGGHSGEILKQLTSGHLYSFDQDETAIHYNQANLGPAIEEGKLTLMQTNFRNLKQALADQGVTAIDGIVYDLGVSSPQFDDAKRGFSYQHDAPLDMRMNQDQPLSAYQVVNEWSYQELVRILYRYGEEKFAKQIARAIERARQKQPIQTTMELANIVKEAIPAAARRHGGHPAKKSFQAIRIAVNDELGALEDSLEQALALLKVGGRISVITFQSLEDRLVKTMFKEATSLPDLPPGLPVIPADAQPDFKLINKKPVLPTEDELKVNHRAHSAKLRVIERLK

GenBank Info

gene - rsmH
locus_tag - FAM19471-i1-1.1_000565
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003674437.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
protein_id - extdb:FAM19471-i1-1.1_000565

Gene Locus

Located on scaffold FAM19471-i1-1_scf7

Cellular location expand

Responsible annotations:
SL-0229: GO:0005622 intracellular anatomical structure
SL-0086: GO:0005737 cytoplasm
FAM19471-i1-1.1_000564
FAM19471-i1-1.1_000566