update range to 10000 bp
locus tag: FAM19471-i1-1.1_000584 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Product
 tRNA 2-thiouridine(34) synthase MnmA
KEGG reaction
 R08700 [enzyme]-S-sulfanylcysteine:tRNA-uridine sulfurtransferase (ATP-hydrolysing); tRNA uridine + [Enzyme]-S-sulfanylcysteine + ATP <=> tRNA containing 2-thiouridine + [Enzyme]-cysteine + AMP + Diphosphate
Ortholog
 N0.HOG0001418 tRNA 2-thiouridine(34) synthase MnmA
Gene Code
 mnmA
KEGG gene
 K00566 mnmA, trmU; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] kornec04122
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043412 macromolecule modification
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0034227 tRNA thio-modification
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0009451 RNA modification
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008033 tRNA processing
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006400 tRNA modification
Gene Ontology
 GO:0006399 tRNA metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0002143 tRNA wobble position uridine thiolation
Gene Ontology
 GO:0002098 tRNA wobble uridine modification
Gene Ontology
 GO:0002097 tRNA wobble base modification
Eggnog Protein
 EP:mnmA
Eggnog Ortholog
 EO:COG0482
Eggnog Description
 ED:Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA
EC Number
 EC:2.8.1.13 tRNA-uridine 2-sulfurtransferase; mnmA (gene name)

Occurs in the following pathway maps:

Pathway Description
kornec04122 Sulfur relay system

Sequences

Nucleotide sequence (GC-content: 54.4 %):

ATGACTGATAACAGTCATACCCGCGTTGTCGTCGGGATGAGCGGGGGCGTAGATTCCTCCGTGACCGCCTTGTTGTTAAAGCAGCAGGGTTACGATGTTGTCGGGGTTTTTATGAAGAACTGGGACGACACCGATGAGAACGGGGTTTGTACCGCAACGGAAGACTATAAAGACGTTGCCAAGGTGGCAACCCAAATTGGGATTCCGTACTACTCGGTTAACTTCGAAAAGGAGTACTGGGACCGGGTCTTTACCTACTTCATTGATGAATTCAAGAAGGGGCGGACGCCAAACCCGGACGTGATCTGCAACAAGGAGATCAAGTTTAAAGCCTTCATCGAGTACGCTAACCAGCTCGGGGCCGATTACGTCGCCACCGGTCACTACGCCGACTTAAAGCGCGACGAAGCCGGTAACATGCACCTGATGCGGGCAAAGGATCAAACCAAGGATCAGACCTACTTCTTGAGTCAACTCGACCACGCCCAATTGGACAAGGTGCTCTTCCCCCTGGCTGGTTACACCAAAAAAGAGGTTCGTCAGCTAGCCAAGGACGCCGGCCTCGTGGTTGCCGACAAGAAGGATTCCGTGGGGATTTGCTTCATCGGTGAGGACGGTCACTTCCGTGAGTTCTTGAGCCAGTACTTGCCGGCCCAACAAGGTGAAATGCAAACCGTTGACGGTAAGGTTGTGGGGACTCACGCCGGCTTGATGTATTACACAATCGGCCAACGCAAGGGCCTCGGCCTTGGGGGAACCAAGGAGAACAACGACCCGTGGTTTGTGATCGGAAAAGACATCACGAAAAACGTTCTCTACGTGGGGCAGGGCTACGAAAACGAGCACCTTTACGCCACCCACATGGAGGCTTCGGATATCCACTGGGTTGACGACGTGGTCAGCCGCTACGGGACGGAGTTTCACTGTACCGCTAAGTTCCGGTACCGCCAAAAGGACGAAGGGGTCACCGTTAAGCTGTCTGACGATGGTCAGATGGTGACCGTGACCAGTGACGATCCCGCCCGCGCCATCACGCCGGGCCAAGCCGTGGTCTTTTACGATGGTGACGAGTGCTTAGGGAGTGCCATTATCGACCGGGCTTACAACCAGGAGCGTCAACTGCAATACGTTTAA

Protein sequence:

MTDNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTDENGVCTATEDYKDVAKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQLGADYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGEMQTVDGKVVGTHAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDIHWVDDVVSRYGTEFHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVVFYDGDECLGSAIIDRAYNQERQLQYV

GenBank Info

gene - mnmA
locus_tag - FAM19471-i1-1.1_000584
EC_number - 2.8.1.13
inference - COORDINATES: similar to AA sequence:RefSeq:WP_003555191.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - tRNA 2-thiouridine(34) synthase MnmA
protein_id - extdb:FAM19471-i1-1.1_000584

Gene Locus

Located on scaffold FAM19471-i1-1_scf7

FAM19471-i1-1.1_000583
FAM19471-i1-1.1_000585