locus tag:
FAM19471-i1-1.1_000589
genome:
FAM19471-i1-1.1
species:
Limosilactobacillus fermentum
taxid:
1613
Annotations
| Type |
Name |
Description |
Pathways |
|
Ortholog
|
N0.HOG0001265 |
exodeoxyribonuclease V subunit alpha |
|
|
KEGG gene
|
K03581 |
recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] |
kornec03440 |
|
Eggnog Protein
|
EP:recD2 |
|
|
|
Eggnog Ortholog
|
EO:COG0507 |
|
|
|
Eggnog Description
|
ED:DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs |
|
|
|
EC Number
|
EC:3.1.11.5 |
exodeoxyribonuclease V; Escherichia coli exonuclease V; E. coli exonuclease V; gene recBC endoenzyme; RecBC deoxyribonuclease; gene recBC DNase; exonuclease V; gene recBCD enzymes |
|
|
Gene Product
|
AAA family ATPase |
|
|
Occurs in the following pathway maps:
| Pathway |
Description |
|
kornec03440
|
Homologous recombination |
Sequences
Nucleotide sequence (GC-content: 55.9 %):
ATGGCGTACCGGGATTATACCCAGCCGGTAATTCATGACGAAAAGGTCCAAGAAACGGGACCAACGCATTTTTCGGGGCGGGTACGAAAAGTTATCTTTTCTAACCCGCCCTTTGCTATTTTAGCGGTGACGGTGTTAAAGGCTGACTTTGAGTGGGACACCGAAGAAATCACCGTTAAGGGTGACGTTGGTCAAGTTAACGAGGGCGATGAGTTTGAATTTGAGGGTCAGGTTGTCAACAACCCGCGCTACGGCTTTGAGTTTGATTTTTCGGGCTTTGTCCACCAGCTGCCTCACGACGCCAAGGAGCTGGCCGCCTTTTTAAAGAAGAACAACGTGGCGGTCAGTGATGAGAAAAAGGTGGCCAAGGCCATTGATGACGCCTTAGGCGAAAAGGCCATGAGCACCCTGATTGGCGACGCCGACGCAATCGAAGTGGTGTCCGGGTTGAGTCAAAAAGACATCGCGACCTTAAAGACCTTTTTCAACCGGTTGGTCAAAGATGACGAGGCCAGCAAGGCCAACCGCCAGTTGATGATGCTCGGTTTCTCGGCCTGGATGATCCGCCGCTTGCAGGAATTCTACCAACGGCGGTTGCTTAAAATCCTCGAAGAAGACATTTACCAAGTGGTAGCCGATTATGAGCAGTTGGGGATTAGTTTTCGCCCGGTGGATGAGGCGGCACGCCAGTATCAAGACGTGGCCTTCGATGATCCCCGCCGCATCGATGGGGCTCTCCTCTTTGCCGCCCAAATTCTGATTCGGGAAAATTCCGGCTCGTACGTCGCCCCGCAATTACTGTTGAACCGGGCTAGCCAACTCCTTAACCAGGGCGCCACCGTCAGCCAGGATACCCTGGCGGCGCGTTTGGGAATTTTACTGACCCAAAAGAAGCTTTACCACGTGCCCGAGCGGGGAATCTACCCGGCCCTGTTCTTTCACGCCGAAAATTTAATTGCCAGTCAGCTTCACCAGATGATGGCGGCGGCCCAGCCGGTCAGCGCCAAGCGGCAAAAGCTGATTGAAAAGATAGTTGATCAGGTGGCCAAGGAACAAAAAATCACTTACGACGACCAGCAAAAGGCGGCGATTAAACAGGCCTTAGAAGCACCGGTGCTGCTCTTGACCGGGGGACCGGGGACCGGGAAGACGACGATTCTAAACGGGATCGTGCGGGCATACCGGCGCCTGTTAAAAGAGGACGGCCAAAAGCTCCACGCTTGGAGCGATGGGGAACCAATTCAGTTAGTTGCCCCCACCGGGCGGGCGGCTAAGCAAGCCCGCCAGGCGATCACGGGTGAGGGCGTTGCCGCGTCAACCATCCACCACTTCTTGAGCATTGCAACCGATAACGATGCCGCCCGTTTGATTGAAAAACCGGCGCCCCTAGAAAATGCCGGTCAGATGCTGGTGGTTGACGAAATGTCGATGACCTCCACCCTCTTGATGGGGGGGCTAATGGCGGTGATCCCGACCAACATCCACTTAGTGTTAGTCGGTGACTTCGATCAGCTGCCGTCGGTGGGACCGGGGCAGGTGTTCCGGGACTTGCTCGAATCTAATTGCTTACCGCAAGTCCGCTTGGAACGGATTTACCGCCAGGACGCCGATTCCTCTTTGATCCCGTTAGCCCAGCGGATCAACAAGGGGGACGTTGACGAGGACTTCATTGCCCCCACCCCAAAGACTAAGTACCCCAAGCGAATCTTTGTGACCACCGCCGCTCGCGACGTTCCGGCCCGGATTGGTCAGCTAGTCGACGCCTACTTGGGTGGTCACGACTTGGATATTCAAGATATTCAGATCTTAACCCCGCTACGGCGCCACCGCGACCTGATTAATAGCTACTTGCAAGACCACCTGAATCCGGCCAGCTTAAACCAGGCCACTTACCGGTTACGAAGCCGGGAGCTACGGGTGGGCGACAAGGTAATGCAGACAACGAACGACTCCGACGCCGAGGTTTATAACGGTGACATCGGGATCATCAAGTCGATTGCCGGGAAAGATAAGCACGTCGTTAACGGCGATCGGCTCGCCAAAAAGGAGAAGGTGCACCTGAAGGTCACGGTCGACTTTGCTGGCCACCTGGTTAAATACGATGACCCCACCGCCCTGGCTAACTTAGAACTGGCCTACGCGATGACGATTCACAAGGCACAGGGGAGTCAGGCGCCGGTCGTGATTGTGACCTTGCTGTCGGAGTTTTTCCCGACTAACCCCCAGGCTGGTTCAATCATCCAACGTAACCTCTTGTACACGGCAGTGACCCGGTCGTCGCGGGCTCTGGTGATGGTGGGTGACGCCCCGGCCTTCGTGCGTTGCTCTAAGACGCCGGTGGTGGACCGCCCCACCTCGCTCAAGCAGCGACTGAAGTTGGTTTGGCAAGCAGCCCAGCAGGATCCAGACTCCCCGGCAGACGAGAAAGCCCAGACGCCGGTTCAAGAAGAACAACCAGCGGATCACTTGACGCCGGCAATGGTGGAAGACGAACGGGTGGACCCGCTGATCGGCATGGATGGATTAAGTCCGGCCGACTTTGCCTAA
Protein sequence:
MAYRDYTQPVIHDEKVQETGPTHFSGRVRKVIFSNPPFAILAVTVLKADFEWDTEEITVKGDVGQVNEGDEFEFEGQVVNNPRYGFEFDFSGFVHQLPHDAKELAAFLKKNNVAVSDEKKVAKAIDDALGEKAMSTLIGDADAIEVVSGLSQKDIATLKTFFNRLVKDDEASKANRQLMMLGFSAWMIRRLQEFYQRRLLKILEEDIYQVVADYEQLGISFRPVDEAARQYQDVAFDDPRRIDGALLFAAQILIRENSGSYVAPQLLLNRASQLLNQGATVSQDTLAARLGILLTQKKLYHVPERGIYPALFFHAENLIASQLHQMMAAAQPVSAKRQKLIEKIVDQVAKEQKITYDDQQKAAIKQALEAPVLLLTGGPGTGKTTILNGIVRAYRRLLKEDGQKLHAWSDGEPIQLVAPTGRAAKQARQAITGEGVAASTIHHFLSIATDNDAARLIEKPAPLENAGQMLVVDEMSMTSTLLMGGLMAVIPTNIHLVLVGDFDQLPSVGPGQVFRDLLESNCLPQVRLERIYRQDADSSLIPLAQRINKGDVDEDFIAPTPKTKYPKRIFVTTAARDVPARIGQLVDAYLGGHDLDIQDIQILTPLRRHRDLINSYLQDHLNPASLNQATYRLRSRELRVGDKVMQTTNDSDAEVYNGDIGIIKSIAGKDKHVVNGDRLAKKEKVHLKVTVDFAGHLVKYDDPTALANLELAYAMTIHKAQGSQAPVVIVTLLSEFFPTNPQAGSIIQRNLLYTAVTRSSRALVMVGDAPAFVRCSKTPVVDRPTSLKQRLKLVWQAAQQDPDSPADEKAQTPVQEEQPADHLTPAMVEDERVDPLIGMDGLSPADFA
GenBank Info
locus_tag - FAM19471-i1-1.1_000589
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391008.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - AAA family ATPase
protein_id - extdb:FAM19471-i1-1.1_000589
Gene Locus
Located on scaffold FAM19471-i1-1_scf7
FAM19471-i1-1.1_000588
