update range to 10000 bp
locus tag: FAM19471-i1-1.1_000623 genome: FAM19471-i1-1.1
species: Limosilactobacillus fermentum taxid: 1613

Annotations

Type Name Description Pathways
Gene Code
 rnz
Gene Product
 ribonuclease Z
Ortholog
 N0.HOG0003402 ribonuclease Z
KEGG gene
 K00784 rnz; ribonuclease Z [EC:3.1.26.11] kornec03013
Gene Ontology
 GO:1905267 endonucleolytic cleavage involved in tRNA processing
Gene Ontology
 GO:1901360 organic cyclic compound metabolic process
Gene Ontology
 GO:0140098 catalytic activity, acting on RNA
Gene Ontology
 GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
Gene Ontology
 GO:0090501 RNA phosphodiester bond hydrolysis
Gene Ontology
 GO:0090305 nucleic acid phosphodiester bond hydrolysis
Gene Ontology
 GO:0090304 nucleic acid metabolic process
Gene Ontology
 GO:0071704 organic substance metabolic process
Gene Ontology
 GO:0046483 heterocycle metabolic process
Gene Ontology
 GO:0044238 primary metabolic process
Gene Ontology
 GO:0044237 cellular metabolic process
Gene Ontology
 GO:0043628 small regulatory ncRNA 3'-end processing
Gene Ontology
 GO:0043170 macromolecule metabolic process
Gene Ontology
 GO:0042781 3'-tRNA processing endoribonuclease activity
Gene Ontology
 GO:0042780 tRNA 3'-end processing
Gene Ontology
 GO:0042779 tRNA 3'-trailer cleavage
Gene Ontology
 GO:0034660 ncRNA metabolic process
Gene Ontology
 GO:0034641 cellular nitrogen compound metabolic process
Gene Ontology
 GO:0034470 ncRNA processing
Gene Ontology
 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic
Gene Ontology
 GO:0031123 RNA 3'-end processing
Gene Ontology
 GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
Gene Ontology
 GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters
Gene Ontology
 GO:0016788 hydrolase activity, acting on ester bonds
Gene Ontology
 GO:0016787 hydrolase activity
Gene Ontology
 GO:0016070 RNA metabolic process
Gene Ontology
 GO:0010467 gene expression
Gene Ontology
 GO:0009987 cellular process
Gene Ontology
 GO:0008152 metabolic process
Gene Ontology
 GO:0008150 biological_process
Gene Ontology
 GO:0008033 tRNA processing
Gene Ontology
 GO:0006807 nitrogen compound metabolic process
Gene Ontology
 GO:0006725 cellular aromatic compound metabolic process
Gene Ontology
 GO:0006399 tRNA metabolic process
Gene Ontology
 GO:0006396 RNA processing
Gene Ontology
 GO:0006139 nucleobase-containing compound metabolic process
Gene Ontology
 GO:0004540 ribonuclease activity
Gene Ontology
 GO:0004521 endoribonuclease activity
Gene Ontology
 GO:0004519 endonuclease activity
Gene Ontology
 GO:0004518 nuclease activity
Gene Ontology
 GO:0003824 catalytic activity
Gene Ontology
 GO:0003674 molecular_function
Eggnog Protein
 EP:rnz
Eggnog Ortholog
 EO:COG1234
Eggnog Description
 ED:Zinc phosphodiesterase
EC Number
 EC:3.1.26.11 tRNase Z; 3 tRNase; tRNA 3 endonuclease; RNase Z; 3' tRNase

Occurs in the following pathway maps:

Pathway Description
kornec03013 RNA transport

Sequences

Nucleotide sequence (GC-content: 57.9 %):

ATGCAGATTGAATTTTTAGGAACTGGGGCGGGGTCGCCAAGTAAGCAACGGAACGTTTCAAGCCTGGCCCTGCGCCTGTTAGAGGAACGCAACGCCATTTGGCTCTTTGACTGCGGGGAGGCGACCCAACACCAGATCCTGCACACCACCATTCGCCCCCGCAAGGTGGAAAAGATTTTCATCACCCACCTGCACGGCGATCACATCTTTGGTTTGCCCGGCTTCTTGTCGTCGCGCTCCTTTCAGGGCGGCGACGAACCGCTAACCATTTACGGACCCAAGGGGATTAAAGACTTTGTGCAAACCGCCCTCAAGGTGTCGGAATCGCGCCTGTCTTACCCGCTCAAGTTCGTGGAGCTGACTGGCGATGGCGAGGTCTTTAAGGACCAAACCTTCACCGTGACCGCCCGGCGGCTGGACCACAAGATTGCCAGCTTTGGCTACCGGGTGGAAGAGGCGGCCCACCCTGGTGAACTGATGGTTGAAAAGGTACGCCAAGCTGGGATTCCGTCGGGGCCACTGTACGGCCAACTCAAGCGCGGTGAGGTGGTGACCCTGCCAGACGGCCGCACGGTCGATGGCCACGACTTCATCGGGGCGCCGCAACCGGGCCGGATCGTCGCTATTTTAGGCGATACCCGGGTGACCGATAACGCCGTTAAGTTAGCTAAGGGCGCCGACGTCCTAGTTCACGAGGCGACCTTTGCCAAAAACGAGCAACGCTTAGCCCACAACTACTACCACTCAACCAGCGCCCAGGCGGCCACGGTTGCCAAAAAGGCGGGTGCCCAGCGCTTATTGCTCAACCACATTTCGGCGCGTTACGTCGGCAGGTACGCCAATGAGCTGGCCTACCAAGTGCGGGACATTTTTGAGCAAACCCGGGTGGTGAATGATTTAGACGTCATCGAGATTCCTTTTAAGGAAAGGTAA

Protein sequence:

MQIEFLGTGAGSPSKQRNVSSLALRLLEERNAIWLFDCGEATQHQILHTTIRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFVELTGDGEVFKDQTFTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPSGPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGADVLVHEATFAKNEQRLAHNYYHSTSAQAATVAKKAGAQRLLLNHISARYVGRYANELAYQVRDIFEQTRVVNDLDVIEIPFKER

GenBank Info

gene - rnz
locus_tag - FAM19471-i1-1.1_000623
EC_number - 3.1.26.11
inference - COORDINATES: similar to AA sequence:RefSeq:WP_012391023.1
note - Derived by automated computational analysis using gene prediction method: Protein Homology.
codon_start - 1
transl_table - 11
product - ribonuclease Z
protein_id - extdb:FAM19471-i1-1.1_000623

Gene Locus

Located on scaffold FAM19471-i1-1_scf8

FAM19471-i1-1.1_000622
FAM19471-i1-1.1_000624